Time Course-Dependent Methanogenic Crude Oil Biodegradation: Dynamics of Fumarate Addition Metabolites, Biodegradative Genes, and Microbial Community Composition

Tracing microbial hydrocarbon transformation processes in a high temperature petroleum reservoir using signature metabolites

(2017) Andrea Gruner et al.   ORGANIC GEOCHEMISTRY

The Effectiveness of Nitrate-Mediated Control of the Oil Field Sulfur Cycle Depends on the Toluene Content of the Oil

(2017) Navreet Suri et al.   Frontiers in Microbiology

Conversion of petroleum to methane by the indigenous methanogenic consortia for oil recovery in heavy oil reservoir

(2016) Wenjie Xia et al.   APPLIED ENERGY

Methanogenic paraffin degradation proceeds via alkane addition to fumarate by ‘Smithella’ spp. mediated by a syntrophic coupling with hydrogenotrophic methanogens

(2016) Boris Wawrik et al.   ENVIRONMENTAL MICROBIOLOGY

Anaerobic Microbial Degradation of Hydrocarbons: From Enzymatic Reactions to the Environment

(2016) Ralf Rabus et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs

(2016) Ping Hu et al.   mBio

High Diversity of Anaerobic Alkane-Degrading Microbial Communities in Marine Seep Sediments Based on (1-methylalkyl)succinate Synthase Genes

(2016) Marion H. Stagars et al.   Frontiers in Microbiology

Potential for aerobic and methanogenic oil biodegradation in a water flooded oil field (Dagang oil field)

(2015) Minmin Cai et al.   FUEL

Comparative analysis of metagenomes from three methanogenic hydrocarbon-degrading enrichment cultures with 41 environmental samples

(2015) Boonfei Tan et al.   ISME Journal

Insights into the Anaerobic Biodegradation Pathway of n-Alkanes in Oil Reservoirs by Detection of Signature Metabolites

(2015) Xin-Yu Bian et al.   Scientific Reports

Abundant Atribacteria in deep marine sediment from the Adélie Basin, Antarctica

(2015) Stephanie A. Carr et al.   Frontiers in Microbiology

Solute Concentrations Influence Microbial Methanogenesis in Coal-bearing Strata of the Cherokee Basin, USA

(2015) Matthew F. Kirk et al.   Frontiers in Microbiology

Versatile transformations of hydrocarbons in anaerobic bacteria: substrate ranges and regio- and stereo-chemistry of activation reactions†

(2015) René Jarling et al.   Frontiers in Microbiology

Anaerolineaceae and Methanosaeta turned to be the dominant microorganisms in alkanes-dependent methanogenic culture after long-term of incubation

(2015) Bo Liang et al.   AMB Express

Identification of toluene degraders in a methanogenic enrichment culture

(2014) S. Jane Fowler et al.   FEMS MICROBIOLOGY ECOLOGY

A PCR-based assay for the detection of anaerobic naphthalene degradation

(2014) Brandon E.L. Morris et al.   FEMS MICROBIOLOGY LETTERS

Conversion of crude oil to methane by a microbial consortium enriched from oil reservoir production waters

(2014) Carolina Berdugo-Clavijo et al.   Frontiers in Microbiology

Life in the slow lane; biogeochemistry of biodegraded petroleum containing reservoirs and implications for energy recovery and carbon management

(2014) Ian M. Head et al.   Frontiers in Microbiology

Volatile hydrocarbons inhibit methanogenic crude oil degradation

(2014) Angela Sherry et al.   Frontiers in Microbiology

Members of the uncultured bacterial candidate division WWE1 are implicated in anaerobic digestion of cellulose

(2014) Rim Driss Limam et al.   MicrobiologyOpen

Anaerobic degradation of homocyclic aromatic compounds via arylcarboxyl-coenzyme A esters: organisms, strategies and key enzymes

(2013) Matthias Boll et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial community and potential functional gene diversity involved in anaerobic hydrocarbon degradation and methanogenesis in an oil sands tailings pond

(2013) Dongshan An et al.   GENOME

Metagenomic analysis of an anaerobic alkane-degrading microbial culture: potential hydrocarbon-activating pathways and inferred roles of community members

(2013) Boonfei Tan et al.   GENOME

Evidence that crude oil alkane activation proceeds by different mechanisms under sulfate-reducing and methanogenic conditions

(2013) C.M. Aitken et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community

(2013) Mallory Embree et al.   ISME Journal

Identification and characterization of 2-naphthoyl-coenzyme A reductase, the prototype of a novel class of dearomatizing reductases

(2013) Christian Eberlein et al.   MOLECULAR MICROBIOLOGY

DNA-SIP Reveals That Syntrophaceae Play an Important Role in Methanogenic Hexadecane Degradation

(2013) Lei Cheng et al.   PLoS One

Desulfotomaculum spp. and related gram-positive sulfate-reducing bacteria in deep subsurface environments

(2013) Thomas Aüllo et al.   Frontiers in Microbiology

Enhanced Gene Detection Assays for Fumarate-Adding Enzymes Allow Uncovering of Anaerobic Hydrocarbon Degraders in Terrestrial and Marine Systems

(2012) Frederick von Netzer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Key players and team play: anaerobic microbial communities in hydrocarbon-contaminated aquifers

(2012) Sabine Kleinsteuber et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Analysis of alkane-dependent methanogenic community derived from production water of a high-temperature petroleum reservoir

(2012) Serge Maurice Mbadinga et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction

(2012) Jian Ye et al.   BMC BIOINFORMATICS

Analyses of n-alkanes degrading community dynamics of a high-temperature methanogenic consortium enriched from production water of a petroleum reservoir by a combination of molecular techniques

(2012) Lei Zhou et al.   ECOTOXICOLOGY

Microbial Communities Involved in Methane Production from Hydrocarbons in Oil Sands Tailings

(2012) Tariq Siddique et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Methanogenic biodegradation of two-ringed polycyclic aromatic hydrocarbons

(2012) Carolina Berdugo-Clavijo et al.   FEMS MICROBIOLOGY ECOLOGY

Anaerobic biodegradation of crude oil under sulphate-reducing conditions leads to only modest enrichment of recognized sulphate-reducing taxa

(2012) A. Sherry et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Methanogenic toluene metabolism: community structure and intermediates

(2011) S. Jane Fowler et al.   ENVIRONMENTAL MICROBIOLOGY

The quantitative significance of Syntrophaceae and syntrophic partnerships in methanogenic degradation of crude oil alkanes

(2011) N. D. Gray et al.   ENVIRONMENTAL MICROBIOLOGY

Anaerobic Biodegradation of Longer-Chainn-Alkanes Coupled to Methane Production in Oil Sands Tailings

(2011) Tariq Siddique et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Toluene Depletion in Produced Oil Contributes to Souring Control in a Field Subjected to Nitrate Injection

(2011) Akhil Agrawal et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Methanogenesis, sulfate reduction and crude oil biodegradation in hot Alaskan oilfields

(2010) Lisa M. Gieg et al.   ENVIRONMENTAL MICROBIOLOGY

Anaerobic Biodegradation of BTEX by Original Bacterial Communities from an Underground Gas Storage Aquifer

(2010) Sabrina Berlendis et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Diversity of Benzyl- and Alkylsuccinate Synthase Genes in Hydrocarbon-Impacted Environments and Enrichment Cultures

(2010) Amy V. Callaghan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Biodegradation of low-molecular-weight alkanes under mesophilic, sulfate-reducing conditions: metabolic intermediates and community patterns

(2010) Kristen N. Savage et al.   FEMS MICROBIOLOGY ECOLOGY

Accelerated methanogenesis from aliphatic and aromatic hydrocarbons under iron- and sulfate-reducing conditions

(2010) Michael Siegert et al.   FEMS MICROBIOLOGY LETTERS

The Origin, Prediction and Impact of Oil Viscosity Heterogeneity on the Production Characteristics of Tar Sand and Heavy Oil Reservoirs

(2010) S. Larter et al.   JOURNAL OF CANADIAN PETROLEUM TECHNOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Isotopic fingerprinting of methane and CO2 formation from aliphatic and aromatic hydrocarbons

(2010) Stefan Feisthauer et al.   ORGANIC GEOCHEMISTRY

Sulfide Remediation by Pulsed Injection of Nitrate into a Low Temperature Canadian Heavy Oil Reservoir

(2009) Gerrit Voordouw et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Anaerobic degradation of the aromatic hydrocarbon biphenyl by a sulfate-reducing enrichment culture

(2009) Draženka Selesi et al.   FEMS MICROBIOLOGY ECOLOGY

Anaerobic benzene degradation by Gram-positive sulfate-reducing bacteria

(2009) Nidal Abu Laban et al.   FEMS MICROBIOLOGY ECOLOGY

Combined Genomic and Proteomic Approaches Identify Gene Clusters Involved in Anaerobic 2-Methylnaphthalene Degradation in the Sulfate-Reducing Enrichment Culture N47

(2009) D. Selesi et al.   JOURNAL OF BACTERIOLOGY

Anaerobic Biodegradation of Aromatic Hydrocarbons: Pathways and Prospects

(2009) Julia Foght   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Anaerobic Biodegradation of n-Hexadecane by a Nitrate-Reducing Consortium

(2008) A. V. Callaghan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bioenergy Production via Microbial Conversion of Residual Oil to Natural Gas

(2008) L. M. Gieg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative Assessments of Benzene, Toluene, and Xylene Natural Attenuation by Quantitative Polymerase Chain Reaction Analysis of a Catabolic Gene, Signature Metabolites, and Compound-Specific Isotope Analysis

(2008) Harry R. Beller et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY