High Diversity of Anaerobic Alkane-Degrading Microbial Communities in Marine Seep Sediments Based on (1-methylalkyl)succinate Synthase Genes

Global dispersion and local diversification of the methane seep microbiome

(2015) S. Emil Ruff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Past and future species definitions for Bacteria and Archaea

(2015) Ramon Rosselló-Móra et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Anaerobic degradation of cyclohexane by sulfate-reducing bacteria from hydrocarbon-contaminated marine sediments

(2015) Ulrike Jaekel et al.   Frontiers in Microbiology

The anaerobic degradation of gaseous, nonmethane alkanes — From in situ processes to microorganisms

(2015) Florin Musat   Computational and Structural Biotechnology Journal

network: A Package for Managing Relational Data inR

(2015) Carter T. Butts   Journal of Statistical Software

Anaerobic methanotrophic community of a 5346-m-deep vesicomyid clam colony in the Japan Trench

(2014) J. Felden et al.   Geobiology

Anaerobic oxidation of long-chain n-alkanes by the hyperthermophilic sulfate-reducing archaeon, Archaeoglobus fulgidus

(2014) Nadia Khelifi et al.   ISME Journal

Re-analysis of omics data indicates Smithella may degrade alkanes by addition to fumarate under methanogenic conditions

(2014) Boonfei Tan et al.   ISME Journal

Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps

(2014) Sara Kleindienst et al.   ISME Journal

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

(2014) Pablo Yarza et al.   NATURE REVIEWS MICROBIOLOGY

Conversion of crude oil to methane by a microbial consortium enriched from oil reservoir production waters

(2014) Carolina Berdugo-Clavijo et al.   Frontiers in Microbiology

Evidence that crude oil alkane activation proceeds by different mechanisms under sulfate-reducing and methanogenic conditions

(2013) C.M. Aitken et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community

(2013) Mallory Embree et al.   ISME Journal

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

IMG/M 4 version of the integrated metagenome comparative analysis system

(2013) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Microbial Communities of Deep-Sea Methane Seeps at Hikurangi Continental Margin (New Zealand)

(2013) S. Emil Ruff et al.   PLoS One

Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters

(2013) M. Hugoni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

(2013) A. Murat Eren et al.   Methods in Ecology and Evolution

Geomicrobiological linkages between short-chain alkane consumption and sulfate reduction rates in seep sediments

(2013) Arpita Bose et al.   Frontiers in Microbiology

Functional gene pyrosequencing and network analysis: an approach to examine the response of denitrifying bacteria to increased nitrogen supply in salt marsh sediments

(2013) Jennifer L. Bowen et al.   Frontiers in Microbiology

Anaerobic oxidation of short-chain alkanes in hydrothermal sediments: potential influences on sulfur cycling and microbial diversity

(2013) Melissa M. Adams et al.   Frontiers in Microbiology

Enzymes involved in the anaerobic oxidation of n-alkanes: from methane to long-chain paraffins

(2013) Amy V. Callaghan   Frontiers in Microbiology

Metagenomic analysis and metabolite profiling of deep–sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill

(2013) Nikole E. Kimes et al.   Frontiers in Microbiology

Enhanced Gene Detection Assays for Fumarate-Adding Enzymes Allow Uncovering of Anaerobic Hydrocarbon Degraders in Terrestrial and Marine Systems

(2012) Frederick von Netzer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Analyses of n-alkanes degrading community dynamics of a high-temperature methanogenic consortium enriched from production water of a petroleum reservoir by a combination of molecular techniques

(2012) Lei Zhou et al.   ECOTOXICOLOGY

Characterization of the anaerobic microbial community in oil-polluted subtidal sediments: aromatic biodegradation potential after thePrestigeoil spill

(2012) Alejandro Acosta-González et al.   ENVIRONMENTAL MICROBIOLOGY

Distribution andin situabundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments

(2012) Sara Kleindienst et al.   ENVIRONMENTAL MICROBIOLOGY

Enrichment and dynamics of novel syntrophs in a methanogenic hexadecane-degrading culture from a Chinese oilfield

(2012) Lei Cheng et al.   FEMS MICROBIOLOGY ECOLOGY

Methanogenic Microbial Community Composition of Oily Sludge and Its Enrichment Amended with Alkanes Incubated for Over 500 Days

(2012) Li-Ying Wang et al.   GEOMICROBIOLOGY JOURNAL

Anaerobic degradation of propane and butane by sulfate-reducing bacteria enriched from marine hydrocarbon cold seeps

(2012) Ulrike Jaekel et al.   ISME Journal

Recruitment of Members from the Rare Biosphere of Marine Bacterioplankton Communities after an Environmental Disturbance

(2011) Johanna Sjöstedt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Niche differentiation among mat-forming, sulfide-oxidizing bacteria at cold seeps of the Nile Deep Sea Fan (Eastern Mediterranean Sea)

(2011) S. GRÜNKE et al.   Geobiology

Diversity and dynamics of rare and of resident bacterial populations in coastal sands

(2011) Angélique Gobet et al.   ISME Journal

Hydrogen is an energy source for hydrothermal vent symbioses

(2011) Jillian M. Petersen et al.   NATURE

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

Different Atmospheric Methane-Oxidizing Communities in European Beech and Norway Spruce Soils

(2010) D. M. Degelmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Impact of natural oil and higher hydrocarbons on microbial diversity, distribution, and activity in Gulf of Mexico cold-seep sediments

(2010) Beth N. Orcutt et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

GeneFISH - an in situ technique for linking gene presence and cell identity in environmental microorganisms

(2010) Cristina Moraru et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity of Benzyl- and Alkylsuccinate Synthase Genes in Hydrocarbon-Impacted Environments and Enrichment Cultures

(2010) Amy V. Callaghan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Biodegradation of low-molecular-weight alkanes under mesophilic, sulfate-reducing conditions: metabolic intermediates and community patterns

(2010) Kristen N. Savage et al.   FEMS MICROBIOLOGY ECOLOGY

Weak coupling between sulfate reduction and the anaerobic oxidation of methane in methane-rich seafloor sediments during ex situ incubation

(2010) Marshall W. Bowles et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Microbial communities involved in anaerobic degradation of alkanes

(2010) Serge Maurice Mbadinga et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Microbial nitrate-dependent cyclohexane degradation coupled with anaerobic ammonium oxidation

(2010) Florin Musat et al.   ISME Journal

Concepts and software for a rational design of polynucleotide probes

(2010) Cristina Moraru et al.   Environmental Microbiology Reports

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A strictly anaerobic betaproteobacteriumGeorgfuchsia toluolicagen. nov., sp. nov. degrades aromatic compounds with Fe(III), Mn(IV) or nitrate as an electron acceptor

(2009) Sander A.B. Weelink et al.   FEMS MICROBIOLOGY ECOLOGY

Differential aerobic and anaerobic oxidation of hydrocarbon gases discharged at mud volcanoes in the Nile deep-sea fan

(2009) Vincent Mastalerz et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

On the relationship between methane production and oxidation by anaerobic methanotrophic communities from cold seeps of the Gulf of Mexico

(2008) Beth! Orcutt et al.   ENVIRONMENTAL MICROBIOLOGY

Genes encoding the candidate enzyme for anaerobic activation of n-alkanes in the denitrifying bacterium, strain HxN1

(2007) Olav Grundmann et al.   ENVIRONMENTAL MICROBIOLOGY