Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community

Transcriptomic and Genetic Analysis of Direct Interspecies Electron Transfer

(2013) Pravin Malla Shrestha et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture

(2013) H. M. B. Seth-Smith et al.   GENOME RESEARCH

Evidence that crude oil alkane activation proceeds by different mechanisms under sulfate-reducing and methanogenic conditions

(2013) C.M. Aitken et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

(2013) Mads Albertsen et al.   NATURE BIOTECHNOLOGY

DNA-SIP Reveals That Syntrophaceae Play an Important Role in Methanogenic Hexadecane Degradation

(2013) Lei Cheng et al.   PLoS One

Comparison of mechanisms of hexadecane uptake among pure and mixed cultures derived from a bacterial consortium

(2012) Olivia Tzintzun-Camacho et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Biodegradation of n-hexadecane by bacterial strains B1 and B2 isolated from petroleum-contaminated soil

(2012) Tao Liu et al.   Science China-Chemistry

The genome sequence of Desulfatibacillum alkenivorans AK-01: a blueprint for anaerobic alkane oxidation

(2011) A. V. Callaghan et al.   ENVIRONMENTAL MICROBIOLOGY

The quantitative significance of Syntrophaceae and syntrophic partnerships in methanogenic degradation of crude oil alkanes

(2011) N. D. Gray et al.   ENVIRONMENTAL MICROBIOLOGY

Anaerobic Biodegradation of Longer-Chainn-Alkanes Coupled to Methane Production in Oil Sands Tailings

(2011) Tariq Siddique et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Characterization of an alkane-degrading methanogenic enrichment culture from production water of an oil reservoir after 274 days of incubation

(2011) Li-Ying Wang et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Changes in bacterial communities from anaerobic digesters during petroleum hydrocarbon degradation

(2011) Kerstin E. Scherr et al.   JOURNAL OF BIOTECHNOLOGY

Lipoprotein biosynthesis by prolipoprotein diacylglyceryl transferase is required for efficient spore germination and full virulence of Bacillus anthracis

(2011) Shu Okugawa et al.   MOLECULAR MICROBIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Single-Cell Genomics Reveals Organismal Interactions in Uncultivated Marine Protists

(2011) H. S. Yoon et al.   SCIENCE

Potential for Direct Interspecies Electron Transfer in Methanogenic Wastewater Digester Aggregates

(2011) M. Morita et al.   mBio

High-throughput generation, optimization and analysis of genome-scale metabolic models

(2010) Christopher S Henry et al.   NATURE BIOTECHNOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Alkane degradation under anoxic conditions by a nitrate-reducing bacterium with possible involvement of the electron acceptor in substrate activation

(2010) Johannes Zedelius et al.   Environmental Microbiology Reports

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Degradation of alkanes by bacteria

(2009) Fernando Rojo   ENVIRONMENTAL MICROBIOLOGY

Transcriptome analysis by strand-specific sequencing of complementary DNA

(2009) Dmitri Parkhomchuk et al.   NUCLEIC ACIDS RESEARCH

Community-wide analysis of microbial genome sequence signatures

(2009) Gregory J Dick et al.   GENOME BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Bioenergy Production via Microbial Conversion of Residual Oil to Natural Gas

(2008) L. M. Gieg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH