Dynamics of Gut Microbiota Diversity During the Early Development of an Avian Host: Evidence From a Cross-Foster Experiment

Inside the guts of the city: Urban-induced alterations of the gut microbiota in a wild passerine

(2018) Aimeric Teyssier et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Microbiota of little penguins and short-tailed shearwaters during development

(2017) Meagan L. Dewar et al.   PLoS One

Temporal Stability and the Effect of Transgenerational Transfer on Fecal Microbiota Structure in a Long Distance Migratory Bird

(2017) Jakub Kreisinger et al.   Frontiers in Microbiology

Evolutionary Biology Needs Wild Microbiomes

(2017) Sarah M. Hird   Frontiers in Microbiology

Inheritance and Establishment of Gut Microbiota in Chickens

(2017) Jinmei Ding et al.   Frontiers in Microbiology

Nest design in a changing world: Great tit Parus major nests from a Mediterranean city environment as a case study

(2017) Marcel M. Lambrechts et al.   URBAN ECOSYSTEMS

Patterns of Early-Life Gut Microbial Colonization during Human Immune Development: An Ecological Perspective

(2017) Isabelle Laforest-Lapointe et al.   Frontiers in Immunology

Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks

(2017) H. Pieter J. van Veelen et al.   Microbiome

Immune-Microbiota Interactions: Dysbiosis as a Global Health Issue

(2016) Alan C. Logan et al.   CURRENT ALLERGY AND ASTHMA REPORTS

Strain competition restricts colonization of an enteric pathogen and prevents colitis

(2016) Aaron L Hecht et al.   EMBO REPORTS

Fatty acid profiles of great tit (Parus major) eggs differ between urban and rural habitats, but not between coniferous and deciduous forests

(2016) Alejandra Toledo et al.   NATURWISSENSCHAFTEN

Age-Related Differences in the Gastrointestinal Microbiota of Chinstrap Penguins (Pygoscelis antarctica)

(2016) Andrés Barbosa et al.   PLoS One

A recipe for postfledging survival in great titsParus major: be large and be early (but not too much)

(2016) Samuel Rodríguez et al.   Ecology and Evolution

Fatty acid profiles of great tit (Parus major) eggs differ between urban and rural habitats, but not between coniferous and deciduous forests

(2016) Alejandra Toledo et al.   Science of Nature

Human gut colonisation may be initiated in utero by distinct microbial communities in the placenta and amniotic fluid

(2016) Maria Carmen Collado et al.   Scientific Reports

Feather bacterial load shapes the trade-off between preening and immunity in pigeons

(2015) Sarah Leclaire et al.   BMC EVOLUTIONARY BIOLOGY

obitools: aunix-inspired software package for DNA metabarcoding

(2015) Frédéric Boyer et al.   Molecular Ecology Resources

Accurate multiplexing and filtering for high-throughput amplicon-sequencing

(2015) Philippe Esling et al.   NUCLEIC ACIDS RESEARCH

Diet specialization in a generalist population: the case of breeding great tits Parus major in the Mediterranean area

(2015) E. Pagani-Núñez et al.   OECOLOGIA

Cloacal Microbiome Structure in a Long-Distance Migratory Bird Assessed Using Deep 16sRNA Pyrosequencing

(2015) Jakub Kreisinger et al.   PLoS One

Proteobacteria: microbial signature of dysbiosis in gut microbiota

(2015) Na-Ri Shin et al.   TRENDS IN BIOTECHNOLOGY

Early post hatch nutrition on immune system development and function in broiler chickens

(2015) A.K. PANDA et al.   WORLDS POULTRY SCIENCE JOURNAL

Rearing and foraging affects bumblebee (Bombus terrestris) gut microbiota

(2015) Lindsay K. Newbold et al.   Environmental Microbiology Reports

Social networks predict gut microbiome composition in wild baboons

(2015) Jenny Tung et al.   eLife

Prey size increases with nestling age: are provisioning parents programmed or responding to cues from offspring?

(2014) Karen L. Wiebe et al.   BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Water fleas require microbiota for survival, growth and reproduction

(2014) Marilou P Sison-Mangus et al.   ISME Journal

The human gut microbiota: a dynamic interplay with the host from birth to senescence settled during childhood

(2014) Lorenza Putignani et al.   PEDIATRIC RESEARCH

Composition of Bacterial Assemblages in Different Components of Reed Warbler Nests and a Possible Role of Egg Incubation in Pathogen Regulation

(2014) Hanja B. Brandl et al.   PLoS One

Links between diet, gut microbiota composition and gut metabolism

(2014) Harry J. Flint et al.   PROCEEDINGS OF THE NUTRITION SOCIETY

Sampling locality is more detectable than taxonomy or ecology in the gut microbiota of the brood-parasitic Brown-headed Cowbird (Molothrus ater)

(2014) Sarah M. Hird et al.   PeerJ

Effect of DNA extraction and sample preservation method on rumen bacterial population

(2013) Katerina Fliegerova et al.   ANAEROBE

Variation in Great Tit nest mass and composition and its breeding consequences: a comparative study in four Mediterranean habitats

(2013) Elena Álvarez et al.   Avian Biology Research

Exploring host-microbiota interactions in animal models and humans

(2013) A. D. Kostic et al.   GENES & DEVELOPMENT

Ontogenetic patterns of constitutive immune parameters in altricial house sparrows

(2013) Tess L. Killpack et al.   JOURNAL OF AVIAN BIOLOGY

Richness of human gut microbiome correlates with metabolic markers

(2013) Emmanuelle Le Chatelier et al.   NATURE

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Age-related differences in the cloacal microbiota of a wild bird species

(2013) Wouter FD van Dongen et al.   BMC ECOLOGY

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Animal Behavior and the Microbiome

(2012) V. O. Ezenwa et al.   SCIENCE

The potter’s wheel: the host’s role in sculpting its microbiota

(2011) Charles L. Bevins et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Differences in Culturable Microbial Communities in Bird Nestboxes According to Orientation and Influences on Offspring Quality in Great Tits (Parus major)

(2011) Anne E. Goodenough et al.   MICROBIAL ECOLOGY

Bifidobacteria can protect from enteropathogenic infection through production of acetate

(2011) Shinji Fukuda et al.   NATURE

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Mechanisms controlling pathogen colonization of the gut

(2010) Bärbel Stecher et al.   CURRENT OPINION IN MICROBIOLOGY

Sexually transmitted bacteria affect female cloacal assemblages in a wild bird

(2010) Joël White et al.   ECOLOGY LETTERS

Developmental microbial ecology of the crop of the folivorous hoatzin

(2010) Filipa Godoy-Vitorino et al.   ISME Journal

The Increase of Lactobacillus Species in the Gut Flora of Newborn Broiler Chicks and Ducks Is Associated with Weight Gain

(2010) Emmanouil Angelakis et al.   PLoS One

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differences in intestinal microbiota between avian brood parasites and their hosts

(2009) MAGDALENA RUIZ-RODRÍGUEZ et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Intraspecific Variation and Interspecific Differences in the Bacterial and Fungal Assemblages of Blue Tit (Cyanistes caeruleus) and Great Tit (Parus major) Nests

(2009) Anne E. Goodenough et al.   MICROBIAL ECOLOGY

New perspectives for estimating body condition from mass/length data: the scaled mass index as an alternative method

(2009) Jordi Peig et al.   OIKOS

Bacterial Community in the Crop of the Hoatzin, a Neotropical Folivorous Flying Bird

(2008) F. Godoy-Vitorino et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY