Temporal Stability and the Effect of Transgenerational Transfer on Fecal Microbiota Structure in a Long Distance Migratory Bird

Characterization of the gut microbiota of migratory passerines during stopover along the northern coast of the Gulf of Mexico

(2016) William B. Lewis et al.   JOURNAL OF AVIAN BIOLOGY

Functional Redundancy-Induced Stability of Gut Microbiota Subjected to Disturbance

(2016) Andrés Moya et al.   TRENDS IN MICROBIOLOGY

Marked variation between winter and spring gut microbiota in free-ranging Tibetan Macaques (Macaca thibetana)

(2016) Binghua Sun et al.   Scientific Reports

The Gut Microbiota Modulates Energy Metabolism in the Hibernating Brown Bear Ursus arctos

(2016) Felix Sommer et al.   Cell Reports

Brood parasitism and quasi-parasitism in the European barn swallow Hirundo rustica rustica

(2015) Adéla Petrželková et al.   BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY

Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

(2015) Fredrik Bäckhed et al.   Cell Host & Microbe

Gut microbiota richness promotes its stability upon increased dietary fibre intake in healthy adults

(2015) Julien Tap et al.   ENVIRONMENTAL MICROBIOLOGY

Marked seasonal variation in the wild mouse gut microbiota

(2015) Corinne F Maurice et al.   ISME Journal

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Kinship, inbreeding and fine-scale spatial structure influence gut microbiota in a hindgut-fermenting tortoise

(2015) Michael L. Yuan et al.   MOLECULAR ECOLOGY

Interactions between multiple helminths and the gut microbiota in wild rodents

(2015) Jakub Kreisinger et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Cloacal Microbiome Structure in a Long-Distance Migratory Bird Assessed Using Deep 16sRNA Pyrosequencing

(2015) Jakub Kreisinger et al.   PLoS One

Temporal patterns of rarity provide a more complete view of microbial diversity

(2015) Ashley Shade et al.   TRENDS IN MICROBIOLOGY

Early-life establishment of the swine gut microbiome and impact on host phenotypes

(2015) Núria Mach et al.   Environmental Microbiology Reports

Analysis of intestinal microbiota in hybrid house mice reveals evolutionary divergence in a vertebrate hologenome

(2015) Jun Wang et al.   Nature Communications

Life history correlates of fecal bacterial species richness in a wild population of the blue titCyanistes caeruleus

(2015) Clare McW. H. Benskin et al.   Ecology and Evolution

Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes

(2015) Seth R. Bordenstein et al.   PLOS BIOLOGY

Comparative Gut Microbiota of 59 Neotropical Bird Species

(2015) Sarah M. Hird et al.   Frontiers in Microbiology

qgraph: Network Visualizations of Relationships in Psychometric Data

(2015) Sacha Epskamp et al.   Journal of Statistical Software

Integrated Community Profiling Indicates Long-Term Temporal Stability of the Predominant Faecal Microbiota in Captive Cheetahs

(2015) Anne A. M. J. Becker et al.   PLoS One

Variation in Taxonomic Composition of the Fecal Microbiota in an Inbred Mouse Strain across Individuals and Time

(2015) Yana Emmy Hoy et al.   PLoS One

Temporal Dynamics of the Cecal Gut Microbiota of Juvenile Arctic Ground Squirrels: a Strong Litter Effect across the First Active Season

(2014) Timothy J. Stevenson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Influence of Hand Rearing and Bird Age on the Fecal Microbiota of the Critically Endangered Kakapo

(2014) David W. Waite et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Intra- and Interindividual Variations Mask Interspecies Variation in the Microbiota of Sympatric Peromyscus Populations

(2014) Nielson T. Baxter et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men

(2014) Anne Salonen et al.   ISME Journal

Gastrointestinal microbiota of wild and inbred individuals of two house mouse subspecies assessed using high-throughput parallel pyrosequencing

(2014) Jakub Kreisinger et al.   MOLECULAR ECOLOGY

Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity

(2014) Daniel I. Bolnick et al.   MOLECULAR ECOLOGY

Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice

(2014) Jun Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stability of Gut Enterotypes in Korean Monozygotic Twins and Their Association with Biomarkers and Diet

(2014) Mi Young Lim et al.   Scientific Reports

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

LotuS: an efficient and user-friendly OTU processing pipeline

(2014) Falk Hildebrand et al.   Microbiome

Is Nestling Growth Affected by Nest Reuse and Skin Bacteria in Pied FlycatchersFicedula hypoleuca?

(2013) Sonia González-Braojos et al.   ACTA ORNITHOLOGICA

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Mycoplasmosis in wildlife: a review

(2013) T. G. Sumithra et al.   EUROPEAN JOURNAL OF WILDLIFE RESEARCH

Gender Bias in Autoimmunity Is Influenced by Microbiota

(2013) Leonid Yurkovetskiy et al.   IMMUNITY

Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes

(2013) Katherine R Amato et al.   ISME Journal

Ontogenetic patterns of constitutive immune parameters in altricial house sparrows

(2013) Tess L. Killpack et al.   JOURNAL OF AVIAN BIOLOGY

The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism

(2013) Gijs den Besten et al.   JOURNAL OF LIPID RESEARCH

Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes

(2013) Jon G. Sanders et al.   MOLECULAR ECOLOGY

Obesity-induced gut microbial metabolite promotes liver cancer through senescence secretome

(2013) Shin Yoshimoto et al.   NATURE

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

TagGD: Fast and Accurate Software for DNA Tag Generation and Demultiplexing

(2013) Paul Igor Costea et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Gut Microbiomes of Malawian Twin Pairs Discordant for Kwashiorkor

(2013) M. I. Smith et al.   SCIENCE

The Long-Term Stability of the Human Gut Microbiota

(2013) J. J. Faith et al.   SCIENCE

Mom Knows Best: The Universality of Maternal Microbial Transmission

(2013) Lisa J. Funkhouser et al.   PLOS BIOLOGY

Promotion of Hepatocellular Carcinoma by the Intestinal Microbiota and TLR4

(2012) Dianne H. Dapito et al.   CANCER CELL

Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy

(2012) Omry Koren et al.   CELL

Human milk oligosaccharides: Every baby needs a sugar mama

(2012) L. Bode   GLYCOBIOLOGY

Isolation and Characterization of Anaerobic Bacteria for Symbiotic Recycling of Uric Acid Nitrogen in the Gut of Various Termites

(2012) Arunee Thong-On et al.   MICROBES AND ENVIRONMENTS

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Murine Gut Microbiota Is Defined by Host Genetics and Modulates Variation of Metabolic Traits

(2012) Autumn M. McKnite et al.   PLoS One

Speciation by symbiosis

(2012) Robert M. Brucker et al.   TRENDS IN ECOLOGY & EVOLUTION

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans

(2011) Reiner Jumpertz et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Culturable autochthonous gut bacteria in Atlantic salmon (Salmo salar L.) fed diets with or without chitin. Characterization by 16S rRNA gene sequencing, ability to produce enzymes and in vitro growth inhibition of four fish pathogens

(2011) Fatemeh Askarian et al.   AQUACULTURE

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Depletion of Murine Intestinal Microbiota: Effects on Gut Mucosa and Epithelial Gene Expression

(2011) Dag Henrik Reikvam et al.   PLoS One

Socially transmitted gut microbiota protect bumble bees against an intestinal parasite

(2011) H. Koch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

Antagonistic effect of indigenous skin bacteria of brook charr (Salvelinus fontinalis) against Flavobacterium columnare and F. psychrophilum

(2011) Sébastien Boutin et al.   VETERINARY MICROBIOLOGY

Sexually transmitted bacteria affect female cloacal assemblages in a wild bird

(2010) Joël White et al.   ECOLOGY LETTERS

Diversity and temporal stability of bacterial communities in a model passerine bird, the zebra finch

(2010) CLARE McW. H. BENSKIN et al.   MOLECULAR ECOLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

(2010) A. K. Benson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Independent filtering increases detection power for high-throughput experiments

(2010) R. Bourgon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular characterization of the cloacal microbiota of wild and captive parrots

(2010) Panagiotis G. Xenoulis et al.   VETERINARY MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Differences in intestinal microbiota between avian brood parasites and their hosts

(2009) MAGDALENA RUIZ-RODRÍGUEZ et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The integration of digestion and osmoregulation in the avian gut

(2009) Todd J. McWhorter et al.   BIOLOGICAL REVIEWS

Antimicrobial Activity, Inhibition of Urogenital Pathogens, and Synergistic Interactions Between Lactobacillus Strains

(2009) Francisco O. Ruiz et al.   CURRENT MICROBIOLOGY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

PHYTOPHAGOUS INSECT–MICROBE MUTUALISMS AND ADAPTIVE EVOLUTIONARY DIVERSIFICATION

(2008) Eric M. Janson et al.   EVOLUTION

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE

Immunogenicity and pathogenicity of Helicobacter infections of veterinary animals

(2008) Stacey Harbour et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY