Cloacal Microbiome Structure in a Long-Distance Migratory Bird Assessed Using Deep 16sRNA Pyrosequencing

Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations

(2014) Ali May et al.   BIOINFORMATICS

The microbiome of New World vultures

(2014) Michael Roggenbuck et al.   Nature Communications

Influence of Salmonella enterica serovar Enteritidis infection on the composition of chicken cecal microbiota

(2013) Petra Videnska et al.   BMC Veterinary Research

Metagenomic Analysis of the Pygmy Loris Fecal Microbiome Reveals Unique Functional Capacity Related to Metabolism of Aromatic Compounds

(2013) Bo Xu et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Sex Differences in the Gut Microbiome Drive Hormone-Dependent Regulation of Autoimmunity

(2013) J. G. M. Markle et al.   SCIENCE

Changes of poultry faecal microbiota associated with Clostridium difficile colonisation

(2013) Jure Skraban et al.   VETERINARY MICROBIOLOGY

Rothia mucilaginosaPneumonia Diagnosed by Quantitative Cultures and Intracellular Organisms of Bronchoalveolar Lavage in a Lymphoma Patient

(2013) Eun-Jung Cho et al.   Annals of Laboratory Medicine

Microbial Ecology of the Skin in the Era of Metagenomics and Molecular Microbiology

(2013) G. D. Hannigan et al.   Cold Spring Harbor Perspectives in Medicine

Interspecific variations in the gastrointestinal microbiota in penguins

(2013) Meagan L. Dewar et al.   MicrobiologyOpen

Variation in sperm morphometry and sperm competition among barn swallow (Hirundo rustica) populations

(2012) Terje Laskemoen et al.   BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY

Estimating population diversity with CatchAll

(2012) J. Bunge et al.   BIOINFORMATICS

Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy

(2012) Omry Koren et al.   CELL

Intestinal commensals: influence on immune system and tolerance to pathogens

(2012) Alexander V Chervonsky   CURRENT OPINION IN IMMUNOLOGY

Diet and phylogeny shape the gut microbiota of Antarctic seals: a comparison of wild and captive animals

(2012) Tiffanie M. Nelson et al.   ENVIRONMENTAL MICROBIOLOGY

TBC: A clustering algorithm based on prokaryotic taxonomy

(2012) Jae-Hak Lee et al.   JOURNAL OF MICROBIOLOGY

Fast, accurate error-correction of amplicon pyrosequences using Acacia

(2012) Lauren Bragg et al.   NATURE METHODS

Gut Microbiome of the Critically Endangered New Zealand Parrot, the Kakapo (Strigops habroptilus)

(2012) David W. Waite et al.   PLoS One

A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters

(2012) Susan M. Huse et al.   PLoS One

Gut Microbiota Composition Is Correlated to Grid Floor Induced Stress and Behavior in the BALB/c Mouse

(2012) Katja Maria Bangsgaard Bendtsen et al.   PLoS One

Sex-Related Effects of Reproduction on Biomarkers of Oxidative Damage in Free-living Barn Swallows (Hirundo rustica)

(2012) Diego Rubolini et al.   PLoS One

Differences in crop bacterial community structure between hoatzins from different geographical locations

(2012) Filipa Godoy-Vitorino et al.   RESEARCH IN MICROBIOLOGY

Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans

(2011) Reiner Jumpertz et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Microbiota and Autoimmune Disease: The Hosted Self

(2011) Diane Mathis et al.   Cell Host & Microbe

Bacterial Communities in Central European Bumblebees: Low Diversity and High Specificity

(2011) Hauke Koch et al.   MICROBIAL ECOLOGY

Intestinal Microbiota in Healthy Adults: Temporal Analysis Reveals Individual and Common Core and Relation to Intestinal Symptoms

(2011) Jonna Jalanka-Tuovinen et al.   PLoS One

Cloacal Bacterial Diversity Increases with Multiple Mates: Evidence of Sexual Transmission in Female Common Lizards

(2011) Joël White et al.   PLoS One

Normal gut microbiota modulates brain development and behavior

(2011) R. D. Heijtz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Sexually transmitted bacteria affect female cloacal assemblages in a wild bird

(2010) Joël White et al.   ECOLOGY LETTERS

Bacterial infection causes stress-induced memory dysfunction in mice

(2010) M. G. Gareau et al.   GUT

Diversity and temporal stability of bacterial communities in a model passerine bird, the zebra finch

(2010) CLARE McW. H. BENSKIN et al.   MOLECULAR ECOLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Site and Strain-Specific Variation in Gut Microbiota Profiles and Metabolism in Experimental Mice

(2010) Melissa K. Friswell et al.   PLoS One

Commensal bacteria play a role in mating preference of Drosophila melanogaster

(2010) G. Sharon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

(2010) C. De Filippo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Towards the human intestinal microbiota phylogenetic core

(2009) Julien Tap et al.   ENVIRONMENTAL MICROBIOLOGY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bacterial Community Variation in Human Body Habitats Across Space and Time

(2009) E. K. Costello et al.   SCIENCE

Sexual signal exaggeration affects physiological state in male barn swallows

(2008) Rebecca J. Safran et al.   CURRENT BIOLOGY

The phylogeography of Adelie penguin faecal flora

(2008) Jonathan C. Banks et al.   ENVIRONMENTAL MICROBIOLOGY

Wohlfahrtiimonas chitiniclastica gen. nov., sp. nov., a new gammaproteobacterium isolated from Wohlfahrtia magnifica (Diptera: Sarcophagidae)

(2008) E. M. Toth et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE