The paradox of HBV evolution as revealed from a 16th century mummy

Ancient Egyptian mummy genomes suggest an increase of Sub-Saharan African ancestry in post-Roman periods

(2017) Verena J. Schuenemann et al.   Nature Communications

Adaptive evolution of proteins in hepatitis B virus during divergence of genotypes

(2017) Shengdi Li et al.   Scientific Reports

Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families

(2017) Jemma L. Geoghegan et al.   PLoS Pathogens

17 th Century Variola Virus Reveals the Recent History of Smallpox

(2016) Ana T. Duggan et al.   CURRENT BIOLOGY

Inferences from tip-calibrated phylogenies: a review and a practical guide

(2016) Adrien Rieux et al.   MOLECULAR ECOLOGY

Hepatitis B virus X protein identifies the Smc5/6 complex as a host restriction factor

(2016) Adrien Decorsière et al.   NATURE

HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing

(2016) Hansi Weissensteiner et al.   NUCLEIC ACIDS RESEARCH

Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas

(2016) B. Llamas et al.   Science Advances

Global, regional, and national age–sex specific all-cause and cause-specific mortality for 240 causes of death, 1990–2013: a systematic analysis for the Global Burden of Disease Study 2013

(2015)   LANCET

Dating the origin of hepatitis B virus reveals higher substitution rate and adaptation on the branch leading to F/H genotypes

(2015) Dimitrios Paraskevis et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Measurably evolving pathogens in the genomic era

(2015) Roman Biek et al.   TRENDS IN ECOLOGY & EVOLUTION

Molecular biology of hepatitis B virus infection

(2015) Christoph Seeger et al.   VIROLOGY

Genotypes and Genetic Variability of Hepatitis B Virus

(2014) Anna Kramvis   INTERVIROLOGY

leeHom: adaptor trimming and merging for Illumina sequencing reads

(2014) Gabriel Renaud et al.   NUCLEIC ACIDS RESEARCH

Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal

(2014) Pontus Skoglund et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates

(2014) S. Duchene et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Possible origins and evolution of the hepatitis B virus (HBV)

(2013) Stephen Locarnini et al.   SEMINARS IN CANCER BIOLOGY

Ancient DNA Damage

(2013) J. Dabney et al.   Cold Spring Harbor Perspectives in Biology

Tracing hepatitis B virus to the 16th century in a Korean mummy

(2012) Gila Kahila Bar-Gal et al.   HEPATOLOGY

Dating the origin and dispersal of hepatitis B virus infection in humans and primates

(2012) Dimitrios Paraskevis et al.   HEPATOLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Variola Virus in a 300-Year-Old Siberian Mummy

(2012) Philippe Biagini et al.   NEW ENGLAND JOURNAL OF MEDICINE

Reconstruction of the 1918 Influenza Virus: Unexpected Rewards from the Past

(2012) J. K. Taubenberger et al.   mBio

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

Bayesian Estimation of Substitution Rates from Ancient DNA Sequences with Low Information Content

(2011) Simon Y. W. Ho et al.   SYSTEMATIC BIOLOGY

The Evolutionary Genetics of Emerging Viruses

(2010) Edward C. Holmes   Annual Review of Ecology Evolution and Systematics

A Bayesian Phylogenetic Method to Estimate Unknown Sequence Ages

(2010) B. Shapiro et al.   MOLECULAR BIOLOGY AND EVOLUTION

Target-enrichment strategies for next-generation sequencing

(2010) Lira Mamanova et al.   NATURE METHODS

The Peopling of Europe from the Mitochondrial Haplogroup U5 Perspective

(2010) Boris Malyarchuk et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

A Genetic Variant of Hepatitis B Virus Divergent from Known Human and Ape Genotypes Isolated from a Japanese Patient and Provisionally Assigned to New Genotype J

(2009) K. Tatematsu et al.   JOURNAL OF VIROLOGY

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation

(2008) Mannis van Oven et al.   HUMAN MUTATION

New Complex Recombinant Genotype of Hepatitis B Virus Identified in Vietnam

(2008) T. T. T. Huy et al.   JOURNAL OF VIROLOGY

Hantavirus Evolution in Relation to Its Rodent and Insectivore Hosts: No Evidence for Codivergence

(2008) C. Ramsden et al.   MOLECULAR BIOLOGY AND EVOLUTION

Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960

(2008) Michael Worobey et al.   NATURE

Rates of evolutionary change in viruses: patterns and determinants

(2008) Siobain Duffy et al.   NATURE REVIEWS GENETICS