Bayesian Estimation of Substitution Rates from Ancient DNA Sequences with Low Information Content

Using genetic evidence to evaluate four palaeoanthropological hypotheses for the timing of Neanderthal and modern human origins

(2010) Phillip Endicott et al.   JOURNAL OF HUMAN EVOLUTION

Improved characterisation of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks

(2010) Simon Y. W. Ho et al.   Mitochondrial DNA

Using Time-Structured Data to Estimate Evolutionary Rates of Double-Stranded DNA Viruses

(2010) C. Firth et al.   MOLECULAR BIOLOGY AND EVOLUTION

Revisiting the Insect Mitochondrial Molecular Clock: The Mid-Aegean Trench Calibration

(2010) A. Papadopoulou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics

(2010) P. F. Campos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correcting for Purifying Selection: An Improved Human Mitochondrial Molecular Clock

(2009) Pedro Soares et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Direct multiplex sequencing (DMPS)--a novel method for targeted high-throughput sequencing of ancient and highly degraded DNA

(2009) M. Stiller et al.   GENOME RESEARCH

Ancient mitogenomics

(2009) Simon Y.W. Ho et al.   MITOCHONDRION

Quantitative Prediction of Molecular Clock and Ka/Ks at Short Timescales

(2009) G. I. Peterson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sudden expansion of a single brown bear maternal lineage across northern continental Eurasia after the last ice age: a general demographic model for mammals?

(2009) MARJU KORSTEN et al.   MOLECULAR ECOLOGY

Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods

(2009) MIGUEL NAVASCUÉS et al.   MOLECULAR ECOLOGY

Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes

(2009) A. W. Briggs et al.   SCIENCE

Time Dependency of Molecular Rates in Ancient DNA Data Sets, A Sampling Artifact?

(2009) Regis Debruyne et al.   SYSTEMATIC BIOLOGY

Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times

(2009) Simon Y. W. Ho et al.   SYSTEMATIC BIOLOGY

High mitogenomic evolutionary rates and time dependency

(2009) Sankar Subramanian et al.   TRENDS IN GENETICS

Out of America: Ancient DNA Evidence for a New World Origin of Late Quaternary Woolly Mammoths

(2008) Regis Debruyne et al.   CURRENT BIOLOGY

Characterizing the Time Dependency of Human Mitochondrial DNA Mutation Rate Estimates

(2008) B. M. Henn et al.   MOLECULAR BIOLOGY AND EVOLUTION

Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics

(2008) V. N. Minin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Geological Dates and Molecular Rates: Fish DNA Sheds Light on Time Dependency

(2008) C. P. Burridge et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mammoth genomics

(2008) Michael Hofreiter   NATURE

Sequencing the nuclear genome of the extinct woolly mammoth

(2008) Webb Miller et al.   NATURE

Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes

(2008) M. T. P. Gilbert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid molecular evolution in a living fossil

(2008) Jennifer M. Hay et al.   TRENDS IN GENETICS

Molecular and morphological evolution in tuatara are decoupled

(2008) Sankar Subramanian et al.   TRENDS IN GENETICS

The evolutionary rate of tuatara revisited

(2008) Hilary C. Miller et al.   TRENDS IN GENETICS

Mutation and Evolutionary Rates in Adélie Penguins from the Antarctic

(2008) Craig D. Millar et al.   PLoS Genetics