Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts

A complete annotation of the chromosomes of the cellulase producer Trichoderma reesei provides insights in gene clusters, their expression and reveals genes required for fitness

(2016) Irina S. Druzhinina et al.   Biotechnology for Biofuels

Enhanced cellulase production by Trichoderma harzianum by cultivation on glycerol followed by induction on cellulosic substrates

(2016) Priscila da Silva Delabona et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Cellulases and beyond: the first 70 years of the enzyme producer Trichoderma reesei

(2016) Robert H. Bischof et al.   Microbial Cell Factories

Small genome of the fungusEscovopsis weberi, a specialized disease agent of ant agriculture

(2016) Tom J. B. de Man et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Swollenin from Trichoderma reesei exhibits hydrolytic activity against cellulosic substrates with features of both endoglucanases and cellobiohydrolases

(2015) Martina Andberg et al.   BIORESOURCE TECHNOLOGY

Genomic and transcriptomic analysis of the endophytic fungus Pestalotiopsis fici reveals its lifestyle and high potential for synthesis of natural products

(2015) Xiuna Wang et al.   BMC GENOMICS

Sm2, a paralog of the Trichoderma cerato-platanin elicitor Sm1, is also highly important for plant protection conferred by the fungal-root interaction of Trichoderma with maize

(2015) Romana Gaderer et al.   BMC MICROBIOLOGY

Fungal Cellulases

(2015) Christina M. Payne et al.   CHEMICAL REVIEWS

ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap

(2015) Tauno Metsalu et al.   NUCLEIC ACIDS RESEARCH

Dieback ofPinus nigraSeedlings Caused by a Strain ofTrichoderma viride

(2015) M. G. Li Destri Nicosia et al.   PLANT DISEASE

Biodiversity of Trichoderma (Hypocreaceae) in Southern Europe and Macaronesia

(2015) W.M. Jaklitsch et al.   STUDIES IN MYCOLOGY

The Role of Horizontal Gene Transfer in the Evolution of the Oomycetes

(2015) Fiona Savory et al.   PLoS Pathogens

Fungal metabolic gene clusters—caravans traveling across genomes and environments

(2015) Jennifer H. Wisecaver et al.   Frontiers in Microbiology

Accepted Trichoderma names in the year 2015

(2015) John Bissett et al.   IMA Fungus

Plant Cell Wall–Degrading Enzymes and Their Secretion in Plant-Pathogenic Fungi

(2014) Christian P. Kubicek et al.   Annual Review of Phytopathology

AliView: a fast and lightweight alignment viewer and editor for large datasets

(2014) Anders Larsson   BIOINFORMATICS

The Transcription Factor Ste12 Mediates the Regulatory Role of the Tmk1 MAP Kinase in Mycoparasitism and Vegetative Hyphal Fusion in the Filamentous Fungus Trichoderma atroviride

(2014) Sabine Gruber et al.   PLoS One

The Evolution of Fungal Metabolic Pathways

(2014) Jennifer H. Wisecaver et al.   PLoS Genetics

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

(2013) Anthony Levasseur et al.   Biotechnology for Biofuels

Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism

(2013) Lea Atanasova et al.   BMC GENOMICS

Isolated sinusitis sphenoidalis caused by Trichoderma longibrachiatum in an immunocompetent patient with headache

(2013) E. Molnar-Gabor et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Plant Expansins in Bacteria and Fungi: Evolution by Horizontal Gene Transfer and Independent Domain Fusion

(2013) Nikolas Nikolaidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

MycoCosm portal: gearing up for 1000 fungal genomes

(2013) Igor V. Grigoriev et al.   NUCLEIC ACIDS RESEARCH

The Putative Protein Methyltransferase LAE1 of Trichoderma atroviride Is a Key Regulator of Asexual Development and Mycoparasitism

(2013) Razieh Karimi Aghcheh et al.   PLoS One

Plant-Symbiotic Fungi as Chemical Engineers: Multi-Genome Analysis of the Clavicipitaceae Reveals Dynamics of Alkaloid Loci

(2013) Christopher L. Schardl et al.   PLoS Genetics

Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel Metabolites

(2013) Philipp Wiemann et al.   PLoS Pathogens

Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae (Hypocreales) proposed for acceptance or rejection

(2013) Amy Y. Rossman et al.   IMA Fungus

Host jumping onto close relatives and across kingdoms by Tyrannicordyceps (Clavicipitaceae) gen. nov. and Ustilaginoidea _(Clavicipitaceae)

(2012) Ryan M. Kepler et al.   AMERICAN JOURNAL OF BOTANY

Biological control of the root-knot nematode, Meloidogyne incognita on tomato using bioproducts of microbial origin

(2012) M.A. Radwan et al.   APPLIED SOIL ECOLOGY

Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees

(2012) Maureen Stolzer et al.   BIOINFORMATICS

Experimental mixture design as a tool to enhance glycosyl hydrolases production by a new Trichoderma harzianum P49P11 strain cultivated under controlled bioreactor submerged fermentation

(2012) Priscila da Silva Delabona et al.   BIORESOURCE TECHNOLOGY

T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks

(2012) A. Boc et al.   NUCLEIC ACIDS RESEARCH

Genomic perspectives on the evolution of fungal entomopathogenicity in Beauveria bassiana

(2012) Guohua Xiao et al.   Scientific Reports

Comparative Pathogenomics Reveals Horizontally Acquired Novel Virulence Genes in Fungi Infecting Cereal Hosts

(2012) Donald M. Gardiner et al.   PLoS Pathogens

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Trichoderma: the genomics of opportunistic success

(2011) Irina S. Druzhinina et al.   NATURE REVIEWS MICROBIOLOGY

Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes

(2011) T. A. Richards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome Sequencing and Comparative Transcriptomics of the Model Entomopathogenic Fungi Metarhizium anisopliae and M. acridum

(2011) Qiang Gao et al.   PLoS Genetics

Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional chinese medicine

(2011) Peng Zheng et al.   GENOME BIOLOGY

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

(2011) Christian P Kubicek et al.   GENOME BIOLOGY

Regulation of Morphogenesis and Biocontrol Properties in Trichoderma virens by a VELVET Protein, Vel1

(2010) P. K. Mukherjee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads

(2010) Jeffrey Martin et al.   BMC GENOMICS

Diversity of fungal endophytes in leaves and stems of wild rubber trees (Hevea brasiliensis) in Peru

(2010) Romina Gazis et al.   Fungal Ecology

Red Algae Lose Key Mitochondrial Genes in Response to Becoming Parasitic

(2010) Lillian Hancock et al.   Genome Biology and Evolution

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

(2010) Li-Jun Ma et al.   NATURE

Evolution and Ecophysiology of the Industrial Producer Hypocrea jecorina (Anamorph Trichoderma reesei) and a New Sympatric Agamospecies Related to It

(2010) Irina S. Druzhinina et al.   PLoS One

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

European species of Hypocrea Part I. The green-spored species

(2010) Walter M. Jaklitsch   STUDIES IN MYCOLOGY

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Acquisition of prokaryotic genes by fungal genomes

(2009) Marina Marcet-Houben et al.   TRENDS IN GENETICS

The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion

(2009) Jeffrey J. Coleman et al.   PLoS Genetics

TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops

(2008) I. Milne et al.   BIOINFORMATICS

Funybase: a Fungal phylogenomic database

(2008) Sylvain Marthey et al.   BMC BIOINFORMATICS

Massive Horizontal Gene Transfer in Bdelloid Rotifers

(2008) E. A. Gladyshev et al.   SCIENCE