A complete annotation of the chromosomes of the cellulase producer Trichoderma reesei provides insights in gene clusters, their expression and reveals genes required for fitness

Swollenin from Trichoderma reesei exhibits hydrolytic activity against cellulosic substrates with features of both endoglucanases and cellobiohydrolases

(2015) Martina Andberg et al.   BIORESOURCE TECHNOLOGY

Restoration of female fertility in Trichoderma reesei QM6a provides the basis for inbreeding in this industrial cellulase producing fungus

(2015) Rita Linke et al.   Biotechnology for Biofuels

DNA Double-Strand Breaks and Telomeres Play Important Roles in Trypanosoma brucei Antigenic Variation

(2015) Bibo Li   EUKARYOTIC CELL

Nitrate content in a collection of higher mushrooms

(2015) Renáta Bóbics et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

The ß-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance inTrichoderma reesei

(2015) Sara Ghassemi et al.   MOLECULAR MICROBIOLOGY

The Cerato-Platanin protein Epl-1 from Trichoderma harzianum is involved in mycoparasitism, plant resistance induction and self cell wall protection

(2015) Eriston Vieira Gomes et al.   Scientific Reports

Screening of candidate regulators for cellulase and hemicellulase production in Trichoderma reesei and identification of a factor essential for cellulase production

(2014) Mari Häkkinen et al.   Biotechnology for Biofuels

A Brief Review: The Z-curve Theory and its Application in Genome Analysis

(2014) Ren Zhang et al.   CURRENT GENOMICS

Trichoderma reeseiXYN VI - a novel appendage-dependent eukaryotic glucuronoxylan hydrolase

(2014) Peter Biely et al.   FEBS Journal

Similar is not the same: Differences in the function of the (hemi-)cellulolytic regulator XlnR (Xlr1/Xyr1) in filamentous fungi

(2014) Sylvia Klaubauf et al.   FUNGAL GENETICS AND BIOLOGY

Iron and copper as virulence modulators in human fungal pathogens

(2014) Chen Ding et al.   MOLECULAR MICROBIOLOGY

High-quality genome (re)assembly using chromosomal contact data

(2014) Hervé Marie-Nelly et al.   Nature Communications

The subtelomeric region is important for chromosome recognition and pairing during meiosis

(2014) María del Carmen Calderón et al.   Scientific Reports

Comparative analysis of the Trichoderma reesei transcriptome during growth on the cellulase inducing substrates wheat straw and lactose

(2013) Robert Bischof et al.   Biotechnology for Biofuels

Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism

(2013) Lea Atanasova et al.   BMC GENOMICS

The Polyketide Synthase Gene pks4 of Trichoderma reesei Provides Pigmentation and Stress Resistance

(2013) Lea Atanasova et al.   EUKARYOTIC CELL

Horizontal gene transfer in osmotrophs: playing with public goods

(2013) Thomas A. Richards et al.   NATURE REVIEWS MICROBIOLOGY

antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers

(2013) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Systems Analysis of Lactose Metabolism in Trichoderma reesei Identifies a Lactose Permease That Is Essential for Cellulase Induction

(2013) Christa Ivanova et al.   PLoS One

Is an organic nitrogen source needed for cellulase production by Trichoderma reesei Rut-C30?

(2013) Divanery Rodriguez-Gomez et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Functional Analyses of Trichoderma reesei LAE1 Reveal Conserved and Contrasting Roles of This Regulator

(2013) Razieh Karimi-Aghcheh et al.   G3-Genes Genomes Genetics

Genomic Mechanisms Accounting for the Adaptation to Parasitism in Nematode-Trapping Fungi

(2013) Tejashwari Meerupati et al.   PLoS Genetics

Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses

(2012) Laurent Jourdren et al.   BIOINFORMATICS

Anatomy and evolution of telomeric and subtelomeric regions in the human protozoan parasite Trypanosoma cruzi

(2012) Roberto R Moraes Barros et al.   BMC GENOMICS

Novel traits ofTrichodermapredicted through the analysis of its secretome

(2012) Irina S. Druzhinina et al.   FEMS MICROBIOLOGY LETTERS

Self-assembly at Air/Water Interfaces and Carbohydrate Binding Properties of the Small Secreted Protein EPL1 from the fungusTrichoderma atroviride

(2012) Alexa Frischmann et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Systems biological approaches towards understanding cellulase production by Trichoderma reesei

(2012) Christian P. Kubicek   JOURNAL OF BIOTECHNOLOGY

Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates

(2012) Mari Häkkinen et al.   Microbial Cell Factories

Correlation of gene expression and protein production rate - a system wide study

(2011) Mikko Arvas et al.   BMC GENOMICS

Iron homeostasis—Achilles’ heel of Aspergillus fumigatus?

(2011) Markus Schrettl et al.   CURRENT OPINION IN MICROBIOLOGY

Expression of Biomass-Degrading Enzymes Is a Major Event during Conidium Development in Trichoderma reesei

(2011) Benjamin Metz et al.   EUKARYOTIC CELL

Trichoderma reesei RUT-C30 - thirty years of strain improvement

(2011) R. Peterson et al.   MICROBIOLOGY-SGM

Phylogenomic analysis of polyketide synthase-encoding genes in Trichoderma

(2011) S. E. Baker et al.   MICROBIOLOGY-SGM

Heterochromatin Is Required for Normal Distribution of Neurospora crassa CenH3

(2011) K. M. Smith et al.   MOLECULAR AND CELLULAR BIOLOGY

Trichoderma: the genomics of opportunistic success

(2011) Irina S. Druzhinina et al.   NATURE REVIEWS MICROBIOLOGY

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

(2011) Christian P Kubicek et al.   GENOME BIOLOGY

Coordinated Expression Domains in Mammalian Genomes

(2010) Yong H. Woo et al.   PLoS One

Pathogenicity Determinants in Smut Fungi Revealed by Genome Comparison

(2010) J. Schirawski et al.   SCIENCE

Fungal Effector Proteins

(2009) Ioannis Stergiopoulos et al.   Annual Review of Phytopathology

Operons

(2009) Anne E. Osbourn et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Gene Clusters, Molecular Evolution and Disease: A Speculation

(2009) Leah Elizondo et al.   CURRENT GENOMICS

Terrific Protein Traffic: The Mystery of Effector Protein Delivery by Filamentous Plant Pathogens

(2009) R. Panstruga et al.   SCIENCE

Characterization of Chromosome Ends in the Filamentous Fungus Neurospora crassa

(2008) C. Wu et al.   GENETICS

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

(2008) Diego Martinez et al.   NATURE BIOTECHNOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

The fungus Neurospora crassa displays telomeric silencing mediated by multiple sirtuins and by methylation of histone H3 lysine 9

(2008) Kristina M Smith et al.   Epigenetics & Chromatin

Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes

(2007) Pawel Michalak   GENOMICS