ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap

FactoMineR: AnRPackage for Multivariate Analysis

(2015) Sébastien Lê et al.   Journal of Statistical Software

BoxPlotR: a web tool for generation of box plots

(2014) Michaela Spitzer et al.   NATURE METHODS

imDEV: a graphical user interface to R multivariate analysis tools in Microsoft Excel

(2012) D. Grapov et al.   BIOINFORMATICS

Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges

(2012) Purvesh Khatri et al.   PLoS Computational Biology

g:Profiler—a web server for functional interpretation of gene lists (2011 update)

(2011) Jüri Reimand et al.   NUCLEIC ACIDS RESEARCH

Identification of Prognostic Molecular Features in the Reactive Stroma of Human Breast and Prostate Cancer

(2011) Anne Planche et al.   PLoS One

Tackling the widespread and critical impact of batch effects in high-throughput data

(2010) Jeffrey T. Leek et al.   NATURE REVIEWS GENETICS

Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods

(2009) Priit Adler et al.   GENOME BIOLOGY