An open source tool for automatic spatiotemporal assessment of calcium transients and local ‘signal-close-to-noise’ activity in calcium imaging data

Cell-Autonomous Excitation of Midbrain Dopamine Neurons by Endocannabinoid-Dependent Lipid Signaling

(2017) Stephanie C. Gantz et al.   NEURON

Neurobiology of local and intercellular BDNF signaling

(2017) Manju Sasi et al.   PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY

An integrated calcium imaging processing toolbox for the analysis of neuronal population dynamics

(2017) Sebastián A. Romano et al.   PLoS Computational Biology

Enjoy the Trip: Calcium in Mitochondria Back and Forth

(2016) Diego De Stefani et al.   Annual Review of Biochemistry

Benchmarking Spike Rate Inference in Population Calcium Imaging

(2016) Lucas Theis et al.   NEURON

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data

(2016) Eftychios A. Pnevmatikakis et al.   NEURON

Inferring Neuronal Dynamics from Calcium Imaging Data Using Biophysical Models and Bayesian Inference

(2016) Vahid Rahmati et al.   PLoS Computational Biology

A new low-Ca2+ affinity GAP indicator to monitor high Ca2+ in organelles by luminescence

(2015) Macarena Rodríguez-Prados et al.   CELL CALCIUM

Store-operated calcium entry compensates fast ER calcium loss in resting hippocampal neurons

(2015) Samira Samtleben et al.   CELL CALCIUM

A comparison of fluorescent Ca2+ indicators for imaging local Ca2+ signals in cultured cells

(2015) Jeffrey T. Lock et al.   CELL CALCIUM

The STIM1–ORAI1 microdomain

(2015) Patrick G Hogan   CELL CALCIUM

Automated quantification of neuronal networks and single-cell calcium dynamics using calcium imaging

(2015) Tapan P. Patel et al.   JOURNAL OF NEUROSCIENCE METHODS

The ImageJ ecosystem: An open platform for biomedical image analysis

(2015) Johannes Schindelin et al.   MOLECULAR REPRODUCTION AND DEVELOPMENT

Spontaneous Activity Drives Local Synaptic Plasticity In Vivo

(2015) Johan Winnubst et al.   NEURON

Regulation of dendrite morphogenesis by extrinsic cues

(2015) Pamela Valnegri et al.   TRENDS IN NEUROSCIENCES

A fundamental role for context in instrumental learning and extinction

(2014) Mark E. Bouton et al.   BEHAVIOURAL PROCESSES

An algorithm for automated detection, localization and measurement of local calcium signals from camera-based imaging

(2014) Kyle L. Ellefsen et al.   CELL CALCIUM

Neuronal calcium signaling: function and dysfunction

(2014) Marisa Brini et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Detecting cells using non-negative matrix factorization on calcium imaging data

(2014) Ryuichi Maruyama et al.   NEURAL NETWORKS

STIM1 Controls Neuronal Ca2+ Signaling, mGluR1-Dependent Synaptic Transmission, and Cerebellar Motor Behavior

(2014) Jana Hartmann et al.   NEURON

Neuronal STIMulation at Rest

(2014) R. Hooper et al.   Science Signaling

Store-Operated Calcium Entry Promotes the Degradation of the Transcription Factor Sp4 in Resting Neurons

(2014) J. Lalonde et al.   Science Signaling

High abundance of BDNF within glutamatergic presynapses of cultured hippocampal neurons

(2014) Thomas Andreska et al.   Frontiers in Cellular Neuroscience

Cell-autonomous axon growth of young motoneurons is triggered by a voltage-gated sodium channel

(2013) Andrea Wetzel et al.   Channels

A de novo gain-of-function mutation in SCN11A causes loss of pain perception

(2013) Enrico Leipold et al.   NATURE GENETICS

State of play in amyotrophic lateral sclerosis genetics

(2013) Alan E Renton et al.   NATURE NEUROSCIENCE

Quantitative Analysis of Calcium Spikes in Noisy Fluorescent Background

(2013) Radoslav Janicek et al.   PLoS One

Role of Nav1.9 in activity-dependent axon growth in motoneurons

(2012) Narayan Subramanian et al.   HUMAN MOLECULAR GENETICS

Optimization of a GCaMP Calcium Indicator for Neural Activity Imaging

(2012) J. Akerboom et al.   JOURNAL OF NEUROSCIENCE

STIM proteins: dynamic calcium signal transducers

(2012) Jonathan Soboloff et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Imaging Calcium in Neurons

(2012) Christine Grienberger et al.   NEURON

Fast Spatiotemporal Smoothing of Calcium Measurements in Dendritic Trees

(2012) Eftychios A. Pnevmatikakis et al.   PLoS Computational Biology

Denoising Two-Photon Calcium Imaging Data

(2011) Wasim Q. Malik et al.   PLoS One

Homeostatic Synaptic Plasticity: Local and Global Mechanisms for Stabilizing Neuronal Function

(2011) G. Turrigiano   Cold Spring Harbor Perspectives in Biology

Neuronal Network Formation from Reprogrammed Early Postnatal Rat Cortical Glial Cells

(2010) Robert Blum et al.   CEREBRAL CORTEX

On the Analytic Wavelet Transform

(2010) Jonathan M. Lilly et al.   IEEE TRANSACTIONS ON INFORMATION THEORY

Therapy development in spinal muscular atrophy

(2010) Michael Sendtner   NATURE NEUROSCIENCE

Isolation and enrichment of embryonic mouse motoneurons from the lumbar spinal cord of individual mouse embryos

(2009) Stefan Wiese et al.   Nature Protocols

Fast and Accurate Detection of Action Potentials From Somatic Calcium Fluctuations

(2008) Takuya Sasaki et al.   JOURNAL OF NEUROPHYSIOLOGY

Multiple Roles of Calcium Ions in the Regulation of Neurotransmitter Release

(2008) Erwin Neher et al.   NEURON