Inferring Neuronal Dynamics from Calcium Imaging Data Using Biophysical Models and Bayesian Inference

Calcium-Dependent Calcium Decay Explains STDP in a Dynamic Model of Hippocampal Synapses

(2014) Dominic Standage et al.   PLoS One

VBA: A Probabilistic Treatment of Nonlinear Models for Neurobiological and Behavioural Data

(2014) Jean Daunizeau et al.   PLoS Computational Biology

Photon Shot Noise Limits on Optical Detection of Neuronal Spikes and Estimation of Spike Timing

(2013) Brian A. Wilt et al.   BIOPHYSICAL JOURNAL

A finite rate of innovation algorithm for fast and accurate spike detection from two-photon calcium imaging

(2013) Jon Oñativia et al.   Journal of Neural Engineering

Altered Calcium Metabolism in Aging CA1 Hippocampal Pyramidal Neurons

(2013) M. M. Oh et al.   JOURNAL OF NEUROSCIENCE

Quantifying bursting neuron activity from calcium signals using blind deconvolution

(2013) In Jun Park et al.   JOURNAL OF NEUROSCIENCE METHODS

Ultrasensitive fluorescent proteins for imaging neuronal activity

(2013) Tsai-Wen Chen et al.   NATURE

Bayesian model selection for group studies — Revisited

(2013) L. Rigoux et al.   NEUROIMAGE

Inference of neuronal network spike dynamics and topology from calcium imaging data

(2013) Henry Lütcke et al.   Frontiers in Neural Circuits

Theoretical models of synaptic short term plasticity

(2013) Matthias H. Hennig   Frontiers in Computational Neuroscience

Deterministic and Stochastic Neuronal Contributions to Distinct Synchronous CA3 Network Bursts

(2012) H. Takano et al.   JOURNAL OF NEUROSCIENCE

Stochastic dynamic causal modelling of fMRI data: Should we care about neural noise?

(2012) J. Daunizeau et al.   NEUROIMAGE

Imaging Calcium in Neurons

(2012) Christine Grienberger et al.   NEURON

A Bayesian approach for inferring neuronal connectivity from calcium fluorescent imaging data

(2011) Yuriy Mishchenko et al.   Annals of Applied Statistics

Quantitative aspects of L-type Ca2+ currents

(2011) Henry C. Tuckwell   PROGRESS IN NEUROBIOLOGY

Optical Recording of Neuronal Spiking Activity From Unbiased Populations of Neurons With High Spike Detection Efficiency and High Temporal Precision

(2010) Gayathri N. Ranganathan et al.   JOURNAL OF NEUROPHYSIOLOGY

Fast Nonnegative Deconvolution for Spike Train Inference From Population Calcium Imaging

(2010) Joshua T. Vogelstein et al.   JOURNAL OF NEUROPHYSIOLOGY

Spontaneous network activity visualized by ultrasensitive Ca2+ indicators, yellow Cameleon-Nano

(2010) Kazuki Horikawa et al.   NATURE METHODS

Erratum: High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision

(2010) Benjamin F Grewe et al.   NATURE METHODS

Spike Inference from Calcium Imaging Using Sequential Monte Carlo Methods

(2009) Joshua T. Vogelstein et al.   BIOPHYSICAL JOURNAL

Dynamic causal modeling for EEG and MEG

(2009) Stefan J. Kiebel et al.   HUMAN BRAIN MAPPING

Internally Mediated Developmental Desynchronization of Neocortical Network Activity

(2009) P. Golshani et al.   JOURNAL OF NEUROSCIENCE

Bayesian model selection for group studies

(2009) Klaas Enno Stephan et al.   NEUROIMAGE

Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data

(2009) Eran A. Mukamel et al.   NEURON

Variational Bayesian identification and prediction of stochastic nonlinear dynamic causal models

(2009) J. Daunizeau et al.   PHYSICA D-NONLINEAR PHENOMENA

Sparsification of neuronal activity in the visual cortex at eye-opening

(2009) N. L. Rochefort et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Minimal Hodgkin–Huxley type models for different classes of cortical and thalamic neurons

(2008) Martin Pospischil et al.   BIOLOGICAL CYBERNETICS

Fast and Accurate Detection of Action Potentials From Somatic Calcium Fluctuations

(2008) Takuya Sasaki et al.   JOURNAL OF NEUROPHYSIOLOGY

Population imaging of ongoing neuronal activity in the visual cortex of awake rats

(2008) David S Greenberg et al.   NATURE NEUROSCIENCE

Genetic Dissection of Neural Circuits

(2008) Liqun Luo et al.   NEURON

Ionic Mechanisms of Endogenous Bursting in CA3 Hippocampal Pyramidal Neurons: A Model Study

(2008) Jun Xu et al.   PLoS One