Bacterial community assembly from cow teat skin to ripened cheeses is influenced by grazing systems

Dynamics of bacterial communities during manufacture and ripening of traditional Caciocavallo of Castelfranco cheese in relation to cows' feeding

(2017) Marina Giello et al.   FOOD MICROBIOLOGY

The effects of low-input grazing systems and milk pasteurisation on the chemical composition, microbial communities, and sensory properties of uncooked pressed cheeses

(2017) Marie Frétin et al.   INTERNATIONAL DAIRY JOURNAL

High-throughput metataxonomic characterization of the raw milk microbiota identifies changes reflecting lactation stage and storage conditions

(2017) Conor J. Doyle et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Impacts of Seasonal Housing and Teat Preparation on Raw Milk Microbiota: a High-Throughput Sequencing Study

(2016) Conor J. Doyle et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Physiological adaptations and ovarian cyclicity of Holstein and Montbéliarde cows under two low-input production systems

(2015) J. A. A. Pires et al.   Animal

Temporal and Spatial Differences in Microbial Composition during the Manufacture of a Continental-Type Cheese

(2015) Daniel J. O'Sullivan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Analysis of raw goat milk microbiota: Impact of stage of lactation and lysozyme on microbial diversity

(2015) Elizabeth A. McInnis et al.   FOOD MICROBIOLOGY

jvenn: an interactive Venn diagram viewer

(2014) Philippe Bardou et al.   BMC BIOINFORMATICS

Cheese Rind Communities Provide Tractable Systems for In Situ and In Vitro Studies of Microbial Diversity

(2014) Benjamin E. Wolfe et al.   CELL

Traditional cheeses: Rich and diverse microbiota with associated benefits

(2014) Marie-Christine Montel et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

Impact of subacute ruminal acidosis (SARA) adaptation on rumen microbiota in dairy cattle using pyrosequencing

(2013) S.Y. Mao et al.   ANAEROBE

Facility-Specific “House” Microbiome Drives Microbial Landscapes of Artisan Cheesemaking Plants

(2013) Nicholas A. Bokulich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Investigation of bacterial diversity in the feces of cattle fed different diets1

(2013) M. Kim et al.   JOURNAL OF ANIMAL SCIENCE

High-Throughput Sequencing for Detection of Subpopulations of Bacteria Not Previously Associated with Artisanal Cheeses

(2012) Lisa Quigley et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The diversity of the fecal bacterial community and its relationship with the concentration of volatile fatty acids in the feces during subacute rumen acidosis in dairy cows

(2012) Shengyong Mao et al.   BMC Veterinary Research

Biofilm Formation in Milk Production and Processing Environments; Influence on Milk Quality and Safety

(2012) Sophie Marchand et al.   COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY

Effect of farming system and cheesemaking technology on the physicochemical characteristics, fatty acid profile, and sensory properties of Caciocavallo Palermitano cheese

(2012) A. Bonanno et al.   JOURNAL OF DAIRY SCIENCE

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Cow Teat Skin, a Potential Source of Diverse Microbial Populations for Cheese Production

(2011) Isabelle Verdier-Metz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cultivable microbial communities in raw cow milk and potential transfers from stables of sixteen French farms

(2011) Mallory Vacheyrou et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Molecular analysis of bacterial communities in raw cow milk and the impact of refrigeration on its structure and dynamics

(2010) Dina Raats et al.   FOOD MICROBIOLOGY

Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing1

(2010) T. R. Callaway et al.   JOURNAL OF ANIMAL SCIENCE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Antibacterial free fatty acids: activities, mechanisms of action and biotechnological potential

(2009) Andrew P. Desbois et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Do milking practices influence the bacterial diversity of raw milk?

(2009) Isabelle Verdier-Metz et al.   FOOD MICROBIOLOGY

Relative impacts of land-use, management intensity and fertilization upon soil microbial community structure in agricultural systems

(2008) Kamlesh Jangid et al.   SOIL BIOLOGY & BIOCHEMISTRY

The monitoring, prevention and treatment of sub-acute ruminal acidosis (SARA): A review

(2008) Jörg M.D. Enemark   VETERINARY JOURNAL