- Home
- Publications
- Publication Search
- Publication Details
Title
The Biogeography of Deep Time Phylogenetic Reticulation
Authors
Keywords
-
Journal
SYSTEMATIC BIOLOGY
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2018-03-09
DOI
10.1093/sysbio/syy019
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Evidence that Myotis lucifugus “Subspecies” are Five Nonsister Species, Despite Gene Flow
- (2018) Ariadna E. Morales et al. SYSTEMATIC BIOLOGY
- Ecological divergence in the yellow-bellied kingsnake ( Lampropeltis calligaster ) at two North American biodiversity hotspots
- (2017) A.D. McKelvy et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Using phylogenomics to understand the link between biogeographic origins and regional diversification in ratsnakes
- (2017) Xin Chen et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Phylogenetic tests for evolutionary innovation: the problematic link between key innovations and exceptional diversification
- (2017) Daniel L. Rabosky PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Ancient hybridization fuels rapid cichlid fish adaptive radiations
- (2017) Joana I. Meier et al. Nature Communications
- Genome-wide signatures of complex introgression and adaptive evolution in the big cats
- (2017) Henrique V. Figueiró et al. Science Advances
- The evolutionary history of bears is characterized by gene flow across species
- (2017) Vikas Kumar et al. Scientific Reports
- Asynchronous diversification of snakes in the North American warm deserts
- (2016) Edward A. Myers et al. JOURNAL OF BIOGEOGRAPHY
- Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis
- (2016) Dingqiao Wen et al. MOLECULAR ECOLOGY
- Infomap Bioregions: Interactive Mapping of Biogeographical Regions from Species Distributions
- (2016) Daniel Edler et al. SYSTEMATIC BIOLOGY
- Displayed Trees Do Not Determine Distinguishability Under the Network Multispecies Coalescent
- (2016) Sha Zhu et al. SYSTEMATIC BIOLOGY
- Deep Learning for Population Genetic Inference
- (2016) Sara Sheehan et al. PLoS Computational Biology
- Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent
- (2016) Dingqiao Wen et al. PLoS Genetics
- Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting
- (2016) Claudia Solís-Lemus et al. PLoS Genetics
- ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
- (2015) Siavash Mirarab et al. BIOINFORMATICS
- Conservation genomics reveals multiple evolutionary units within Bell’s Vireo (Vireo bellii)
- (2015) Luke B. Klicka et al. CONSERVATION GENETICS
- A new dynamic null model for phylogenetic community structure
- (2015) Alex L. Pigot et al. ECOLOGY LETTERS
- Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae)
- (2015) Gang Li et al. GENOME RESEARCH
- Speciation with gene flow in whiptail lizards from a Neotropical xeric biome
- (2015) Eliana F. Oliveira et al. MOLECULAR ECOLOGY
- Machine learning applications in genetics and genomics
- (2015) Maxwell W. Libbrecht et al. NATURE REVIEWS GENETICS
- Exploring Tree-Like and Non-Tree-Like Patterns Using Genome Sequences: An Example Using the Inbreeding Plant SpeciesArabidopsis thaliana(L.) Heynh
- (2015) Noah W. M. Stenz et al. SYSTEMATIC BIOLOGY
- Which Phylogenetic Networks are Merely Trees with Additional Arcs?
- (2015) Andrew R. Francis et al. SYSTEMATIC BIOLOGY
- Building Predictive Models inRUsing thecaretPackage
- (2015) Max Kuhn Journal of Statistical Software
- Multiple origins of parthenogenesis, and a revised species phylogeny for the Southeast Asian butterfly lizards,Leiolepis
- (2014) Jesse L. Grismer et al. BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- Hybridisation and diversification in the adaptive radiation of clownfishes
- (2014) Glenn Litsios et al. BMC EVOLUTIONARY BIOLOGY
- HOW COMMON IS HOMOPLOID HYBRID SPECIATION?
- (2014) Molly Schumer et al. EVOLUTION
- Hybridization, Introgression, and the Nature of Species Boundaries
- (2014) Richard G. Harrison et al. JOURNAL OF HEREDITY
- Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees
- (2014) Daniel L. Rabosky PLoS One
- Maximum likelihood inference of reticulate evolutionary histories
- (2014) Yun Yu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Speciation with gene flow in equids despite extensive chromosomal plasticity
- (2014) Hákon Jónsson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Model Selection in Historical Biogeography Reveals that Founder-Event Speciation Is a Crucial Process in Island Clades
- (2014) Nicholas J. Matzke SYSTEMATIC BIOLOGY
- Considering gene flow when using coalescent methods to delimit lineages of North American pitvipers of the genusAgkistrodon
- (2014) Frank T. Burbrink et al. ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic trees
- (2014) Daniel L. Rabosky et al. Methods in Ecology and Evolution
- Evidence for Mito-Nuclear and Sex-Linked Reproductive Barriers between the Hybrid Italian Sparrow and Its Parent Species
- (2014) Cassandra N. Trier et al. PLoS Genetics
- A phylogenetic analysis of the grape genus (Vitis L.) reveals broad reticulation and concurrent diversification during neogene and quaternary climate change
- (2013) Yizhen Wan et al. BMC EVOLUTIONARY BIOLOGY
- PHYLOGENOMICS REVEALS EXTENSIVE RETICULATE EVOLUTION INXIPHOPHORUSFISHES
- (2013) Rongfeng Cui et al. EVOLUTION
- Genome-wide evidence for speciation with gene flow inHeliconiusbutterflies
- (2013) Simon H. Martin et al. GENOME RESEARCH
- Hybridization and speciation
- (2013) R. Abbott et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- Multilocus phylogeographic assessment of the California Mountain Kingsnake (Lampropeltis zonata) suggests alternative patterns of diversification for the California Floristic Province
- (2013) E. A. Myers et al. MOLECULAR ECOLOGY
- Coalescent Species Delimitation in Milksnakes (Genus Lampropeltis) and Impacts on Phylogenetic Comparative Analyses
- (2013) S. Ruane et al. SYSTEMATIC BIOLOGY
- The Influence of Gene Flow on Species Tree Estimation: A Simulation Study
- (2013) Adam D. Leaché et al. SYSTEMATIC BIOLOGY
- Phylogenetic estimates of speciation and extinction rates for testing ecological and evolutionary hypotheses
- (2013) R. Alexander Pyron et al. TRENDS IN ECOLOGY & EVOLUTION
- Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus
- (2013) Laurent AF Frantz et al. GENOME BIOLOGY
- Evidence for determinism in species diversification and contingency in phenotypic evolution during adaptive radiation
- (2012) F. T. Burbrink et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics
- (2012) Alan R. Lemmon et al. SYSTEMATIC BIOLOGY
- The genomics of speciation-with-gene-flow
- (2012) Jeffrey L. Feder et al. TRENDS IN GENETICS
- abc: an R package for approximate Bayesian computation (ABC)
- (2012) Katalin Csilléry et al. Methods in Ecology and Evolution
- Genetic Introgression: An Integral but neglected component of speciation in birds
- (2011) Frank E. Rheindt et al. AUK
- Next-generation hybridization and introgression
- (2011) A D Twyford et al. HEREDITY
- Speciation at the Mogollon Rim in the Arizona Mountain Kingsnake (Lampropeltis pyromelana)
- (2011) Frank T. Burbrink et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Mammalian phylogeny reveals recent diversification rate shifts
- (2011) T. Stadler PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Slope heuristics: overview and implementation
- (2011) Jean-Patrick Baudry et al. STATISTICS AND COMPUTING
- Coalescent Histories on Phylogenetic Networks and Detection of Hybridization Despite Incomplete Lineage Sorting
- (2011) Yun Yu et al. SYSTEMATIC BIOLOGY
- phytools: an R package for phylogenetic comparative biology (and other things)
- (2011) Liam J. Revell Methods in Ecology and Evolution
- Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes
- (2011) Todd A Castoe et al. GENOME BIOLOGY
- Adaptive Radiation, Ecological Opportunity, and Evolutionary Determinism
- (2010) Jonathan B. Losos AMERICAN NATURALIST
- Origin and Evolution of Parthenogenetic Genomes in Lizards: Current State and Future Directions
- (2010) M.K. Fujita et al. CYTOGENETIC AND GENOME RESEARCH
- Illuminating the lack of consensus among descriptions of earth history data in the North American deserts: A resource for biologists
- (2010) Joseph S. Wilson et al. PROGRESS IN PHYSICAL GEOGRAPHY
- Quantitative Traits and Diversification
- (2010) Richard G. FitzJohn SYSTEMATIC BIOLOGY
- Diversity dynamics: molecular phylogenies need the fossil record
- (2010) Tiago B. Quental et al. TRENDS IN ECOLOGY & EVOLUTION
- Inferring the Dynamics of Diversification: A Coalescent Approach
- (2010) Hélène Morlon et al. PLOS BIOLOGY
- The Role of Hybridization in Plant Speciation
- (2009) Pamela S. Soltis et al. Annual Review of Plant Biology
- The merging of community ecology and phylogenetic biology
- (2009) Jeannine Cavender-Bares et al. ECOLOGY LETTERS
- EXTINCTION RATES SHOULD NOT BE ESTIMATED FROM MOLECULAR PHYLOGENIES
- (2009) Daniel L. Rabosky EVOLUTION
- Can the tropical conservatism hypothesis explain temperate species richness patterns? An inverse latitudinal biodiversity gradient in the New World snake tribe Lampropeltini
- (2009) R. Alexander Pyron et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- Isolation with Migration Models for More Than Two Populations
- (2009) Jody Hey MOLECULAR BIOLOGY AND EVOLUTION
- Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates
- (2009) M. E. Alfaro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Estimating Trait-Dependent Speciation and Extinction Rates from Incompletely Resolved Phylogenies
- (2009) Richard G. FitzJohn et al. SYSTEMATIC BIOLOGY
- Genomic Clues to the Evolutionary Success of Polyploid Plants
- (2008) Matthew J. Hegarty et al. CURRENT BIOLOGY
- Speciation with gene flow could be common
- (2008) PATRIK NOSIL MOLECULAR ECOLOGY
- A Comparative Study in Ancestral Range Reconstruction Methods: Retracing the Uncertain Histories of Insular Lineages
- (2008) John R. Clark et al. SYSTEMATIC BIOLOGY
- Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis
- (2008) Richard H. Ree et al. SYSTEMATIC BIOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started