RNA-Seq analysis revealed genes associated with drought stress response in kabuli chickpea (Cicer arietinum L.)

Drought stress tolerance strategies revealed by RNA-Seq in two sorghum genotypes with contrasting WUE

(2016) Alessandra Fracasso et al.   BMC PLANT BIOLOGY

Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)

(2016) Mahendar Thudi et al.   BMC PLANT BIOLOGY

Overexpression of MtWRKY76 increases both salt and drought tolerance in Medicago truncatula

(2016) Liping Liu et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea

(2016) Gaurav Agarwal et al.   PLANT BIOTECHNOLOGY JOURNAL

Transcriptome analyses reveal genotype- and developmental stage-specific molecular responses to drought and salinity stresses in chickpea

(2016) Rohini Garg et al.   Scientific Reports

Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.)

(2016) Mahendar Thudi et al.   Scientific Reports

RNA-Seq analysis identifies genes associated with differential reproductive success under drought-stress in accessions of wild barley Hordeum spontaneum

(2015) Sariel Hübner et al.   BMC PLANT BIOLOGY

Global insights into high temperature and drought stress regulated genes by RNA-Seq in economically important oilseed crop Brassica juncea

(2015) Ankur R Bhardwaj et al.   BMC PLANT BIOLOGY

CarNAC4, a NAC-type chickpea transcription factor conferring enhanced drought and salt stress tolerances in Arabidopsis

(2015) Xingwang Yu et al.   PLANT CELL REPORTS

SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence

(2015) Hironori Takasaki et al.   PLANT JOURNAL

The Evolution of Mechanisms Driving the Stomatal Response to Vapor Pressure Deficit

(2015) Scott A.M. McAdam et al.   PLANT PHYSIOLOGY

Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.)

(2015) Sandip M Kale et al.   Scientific Reports

Correlation between differential drought tolerability of two contrasting drought-responsive chickpea cultivars and differential expression of a subset of CaNAC genes under normal and dehydration conditions

(2015) Kien Huu Nguyen et al.   Frontiers in Plant Science

Expression of chickpea CIPK25 enhances root growth and tolerance to dehydration and salt stress in transgenic tobacco

(2015) Mukesh K. Meena et al.   Frontiers in Plant Science

NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data

(2015) Mohan A. V. S. K. Katta et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Translational Genomics in Agriculture: Some Examples in Grain Legumes

(2014) Rajeev K. Varshney et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Genomics-assisted breeding for drought tolerance in chickpea

(2014) Mahendar Thudi et al.   FUNCTIONAL PLANT BIOLOGY

A novel MYB transcription factor, GmMYBJ1, from soybean confers drought and cold tolerance in Arabidopsis thaliana

(2014) Lian-Tai Su et al.   GENE

Genotyping-by-sequencing based intra-specific genetic map refines a ‘‘QTL-hotspot” region for drought tolerance in chickpea

(2014) Deepa Jaganathan et al.   MOLECULAR GENETICS AND GENOMICS

FourArabidopsis AREB/ABF transcription factors function predominantly in gene expression downstream of SnRK2 kinases in abscisic acid signalling in response to osmotic stress

(2014) TAKUYA YOSHIDA et al.   PLANT CELL AND ENVIRONMENT

Genome-Scale Transcriptomic Insights into Molecular Aspects of Abiotic Stress Responses in Chickpea

(2014) Rohini Garg et al.   PLANT MOLECULAR BIOLOGY REPORTER

Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications

(2014) Himabindu Kudapa et al.   PLoS One

Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells

(2014) Shanrong Zhao et al.   PLoS One

Genetic Dissection of Drought and Heat Tolerance in Chickpea through Genome-Wide and Candidate Gene-Based Association Mapping Approaches

(2014) Mahendar Thudi et al.   PLoS One

Global transcriptome analysis of developing chickpea (Cicer arietinum L.) seeds

(2014) Seema Pradhan et al.   Frontiers in Plant Science

The transcriptional regulatory network in the drought response and its crosstalk in abiotic stress responses including drought, cold, and heat

(2014) Kazuo Nakashima et al.   Frontiers in Plant Science

Proline Mechanisms of Stress Survival

(2013) Xinwen Liang et al.   ANTIOXIDANTS & REDOX SIGNALING

Multiple roles of the transcription factor AtMYBR1/AtMYB44 in ABA signaling, stress responses, and leaf senescence

(2013) Masrur R Jaradat et al.   BMC PLANT BIOLOGY

Partitioning coefficient—A trait that contributes to drought tolerance in chickpea

(2013) L. Krishnamurthy et al.   FIELD CROPS RESEARCH

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

(2013) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.)

(2013) Mukesh Jain et al.   PLANT JOURNAL

Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.)

(2013) Rajeev K. Varshney et al.   THEORETICAL AND APPLIED GENETICS

The First 50 Plant Genomes

(2013) Todd P. Michael et al.   Plant Genome

Current state-of-art of sequencing technologies for plant genomics research

(2012) M. Thudi et al.   Briefings in Functional Genomics

Nutritional quality and health benefits of chickpea (Cicer arietinum L.): a review

(2012) A. K. Jukanti et al.   BRITISH JOURNAL OF NUTRITION

Primary antioxidant free radical scavenging and redox signaling pathways in higher plant cells

(2012) Hong-Bo Shao et al.   International Journal of Biological Sciences

Heat Shock Protein 90 in Plants: Molecular Mechanisms and Roles in Stress Responses

(2012) Zhao-Shi Xu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Drought stress adaptation: metabolic adjustment and regulation of gene expression

(2012) Sujata Bhargava et al.   PLANT BREEDING

The atrzf1 mutation of the novel RING-type E3 ubiquitin ligase increases proline contents and enhances drought tolerance in Arabidopsis

(2012) Hyun-Woo Ju et al.   PLANT SCIENCE

Identification of novel transcripts in annotated genomes using RNA-Seq

(2011) A. Roberts et al.   BIOINFORMATICS

RNA-Seq analysis in MeV

(2011) E. A. Howe et al.   BIOINFORMATICS

Functions and Application of the AP2/ERF Transcription Factor Family in Crop ImprovementF

(2011) Zhao-Shi Xu et al.   Journal of Integrative Plant Biology

Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa

(2011) Pavana J. Hiremath et al.   PLANT BIOTECHNOLOGY JOURNAL

Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.)

(2011) Mahendar Thudi et al.   PLoS One

Transcription factors in plants and ABA dependent and independent abiotic stress signalling

(2010) P. K. Agarwal et al.   BIOLOGIA PLANTARUM

Sugar Input, Metabolism, and Signaling Mediated by Invertase: Roles in Development, Yield Potential, and Response to Drought and Heat

(2010) Yong-Ling Ruan et al.   Molecular Plant

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

A tomato bZIP transcription factor, SlAREB, is involved in water deficit and salt stress response

(2010) Tsai-Hung Hsieh et al.   PLANTA

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.)

(2009) Rajeev K Varshney et al.   BMC GENOMICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS