Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea

Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.)

(2015) Sandip M Kale et al.   Scientific Reports

The CarERF genes in chickpea (Cicer arietinum L.) and the identification of CarERF116 as abiotic stress responsive transcription factor

(2014) Amit A. Deokar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Identification of ERF genes in peanuts and functional analysis of AhERF008 and AhERF019 in abiotic stress response

(2014) Liyun Wan et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

A reference genome for common bean and genome-wide analysis of dual domestications

(2014) Jeremy Schmutz et al.   NATURE GENETICS

ArabidopsisDPB3-1, a DREB2A Interactor, Specifically Enhances Heat Stress-Induced Gene Expression by Forming a Heat Stress-Specific Transcriptional Complex with NF-Y Subunits

(2014) Hikaru Sato et al.   PLANT CELL

Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications

(2014) Himabindu Kudapa et al.   PLoS One

Genome-Wide Investigation and Expression Profiling of AP2/ERF Transcription Factor Superfamily in Foxtail Millet (Setaria italica L.)

(2014) Charu Lata et al.   PLoS One

Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing

(2013) Cuifang Duan et al.   BMC GENOMICS

Genome-wide analysis of the AP2/ERF transcription factor superfamily in Chinese cabbage (Brassica rapa ssp. pekinensis)

(2013) Xiaoming Song et al.   BMC GENOMICS

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

(2013) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

Overexpression of GmHsp90s, a Heat Shock Protein 90 (Hsp90) Gene Family Cloning from Soybean, Decrease Damage of Abiotic Stresses in Arabidopsis thaliana

(2013) Jinyan Xu et al.   PLoS One

Genome-Wide Identification, Phylogeny, Evolution and Expression Patterns of AP2/ERF Genes and Cytokinin Response Factors in Brassica rapa ssp. pekinensis

(2013) Zhenning Liu et al.   PLoS One

New sources of resistance to Fusarium wilt and sterility mosaic disease in a mini-core collection of pigeonpea germplasm

(2012) Mamta Sharma et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Heat Shock Protein 90 in Plants: Molecular Mechanisms and Roles in Stress Responses

(2012) Zhao-Shi Xu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A Comprehensive Transcriptome Assembly of Pigeonpea (Cajanus cajan L.) using Sanger and Second-Generation Sequencing Platforms

(2012) Himabindu Kudapa et al.   Molecular Plant

Vascular Expression and C-Terminal Sequence Divergence of Cytokinin Response Factors in Flowering Plants

(2012) Paul J. Zwack et al.   PLANT AND CELL PHYSIOLOGY

GmDREB2A;2, a Canonical DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN2-Type Transcription Factor in Soybean, Is Posttranslationally Regulated and Mediates Dehydration-Responsive Element-Dependent Gene Expression

(2012) J. Mizoi et al.   PLANT PHYSIOLOGY

AP2/ERF family transcription factors in plant abiotic stress responses

(2011) Junya Mizoi et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera

(2011) Francesco Licausi et al.   BMC GENOMICS

Solanum lycopersicum cytokinin response factor (SlCRF) genes: characterization of CRF domain-containing ERF genes in tomato

(2011) Xiuling Shi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Functions and Application of the AP2/ERF Transcription Factor Family in Crop ImprovementF

(2011) Zhao-Shi Xu et al.   Journal of Integrative Plant Biology

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers

(2011) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

Molecular analysis of common wheat genes encoding three types of cytosolic heat shock protein 90 (Hsp90): functional involvement of cytosolic Hsp90s in the control of wheat seedling growth and disease resistance

(2011) Guan-Feng Wang et al.   NEW PHYTOLOGIST

Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa

(2011) Pavana J. Hiremath et al.   PLANT BIOTECHNOLOGY JOURNAL

Tomato RAV Transcription Factor Is a Pivotal Modulator Involved in the AP2/EREBP-Mediated Defense Pathway

(2011) C.-W. Li et al.   PLANT PHYSIOLOGY

The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.)

(2010) Nikku L Raju et al.   BMC PLANT BIOLOGY

The CRF domain defines Cytokinin Response Factor proteins in plants

(2010) Aaron M Rashotte et al.   BMC PLANT BIOLOGY

Identification, phylogeny, and transcript profiling of ERF family genes during development and abiotic stress treatments in tomato

(2010) Manoj K. Sharma et al.   MOLECULAR GENETICS AND GENOMICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Gene Structures, Classification and Expression Models of the AP2/EREBP Transcription Factor Family in Rice

(2010) Akhter Most Sharoni et al.   PLANT AND CELL PHYSIOLOGY

Hsp90 and Environmental Stress Transform the Adaptive Value of Natural Genetic Variation

(2010) D. F. Jarosz et al.   SCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.)

(2009) Rajeev K Varshney et al.   BMC GENOMICS

Translating Medicago truncatula genomics to crop legumes

(2009) Nevin Dale Young et al.   CURRENT OPINION IN PLANT BIOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

DEAR1, a transcriptional repressor of DREB protein that mediates plant defense and freezing stress responses in Arabidopsis

(2009) Tomokazu Tsutsui et al.   JOURNAL OF PLANT RESEARCH

Molecular diversity and gene expression of cotton ERF transcription factors reveal that group IXa members are responsive to jasmonate, ethylene andXanthomonas

(2009) ANTONY CHAMPION et al.   MOLECULAR PLANT PATHOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa

(2008) Jing Zhuang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

Functions of the ERF transcription factor family in plants

(2008) Zhao-Shi Xu et al.   Botany

Genome Structure of the Legume, Lotus japonicus

(2008) S. Sato et al.   DNA RESEARCH

Phylogeny, gene structures, and expression patterns of the ERF gene family in soybean (Glycine max L.)

(2008) Gaiyun Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY