RNA-Seq analysis identifies genes associated with differential reproductive success under drought-stress in accessions of wild barley Hordeum spontaneum

The chromatin landscape of the mossPhyscomitrella patensand its dynamics during development and drought stress

(2014) Thomas Widiez et al.   PLANT JOURNAL

Genome diversity inBrachypodium distachyon:deep sequencing of highly diverse inbred lines

(2014) Sean P. Gordon et al.   PLANT JOURNAL

Quantitative trait loci-dependent analysis of a gene co-expression network associated with Fusarium head blight resistance in bread wheat (Triticum aestivum L.)

(2013) Karl G Kugler et al.   BMC GENOMICS

Natural variation and genetic constraints on drought tolerance

(2013) Thomas E Juenger   CURRENT OPINION IN PLANT BIOLOGY

Expression analysis of rice VQ genes in response to biotic and abiotic stresses

(2013) D.Y. Kim et al.   GENE

Mechanisms of macroevolution: polyphagous plasticity in butterfly larvae revealed by RNA-Seq

(2013) Maria de la Paz Celorio-Mancera et al.   MOLECULAR ECOLOGY

The Arabidopsis SWR1 Chromatin-Remodeling Complex Is Important for DNA Repair, Somatic Recombination, and Meiosis

(2013) M. Rosa et al.   PLANT CELL

Application of Genomic Tools in Plant Breeding

(2012) A. M. Perez-de-Castro et al.   CURRENT GENOMICS

Vacuolar protein sorting mechanisms in plants

(2012) Li Xiang et al.   FEBS Journal

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Phenotypic landscapes: phenological patterns in wild and cultivated barley

(2012) S. Hübner et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Islands and streams: clusters and gene flow in wild barley populations from the Levant

(2012) SARIEL HÜBNER et al.   MOLECULAR ECOLOGY

Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression

(2011) Zhao Lai et al.   AMERICAN JOURNAL OF BOTANY

Genome-wide approaches to the study of adaptive gene expression evolution

(2011) Hunter B. Fraser   BIOESSAYS

Identification of novel transcripts in annotated genomes using RNA-Seq

(2011) A. Roberts et al.   BIOINFORMATICS

De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq

(2011) Eshchar Mizrachi et al.   BMC GENOMICS

Variation in tolerance to drought among Scandinavian populations of Arabidopsis lyrata

(2011) Nina Sletvold et al.   EVOLUTIONARY ECOLOGY

Faster than Neutral Evolution of Constrained Sequences: The Complex Interplay of Mutational Biases and Weak Selection

(2011) David S. Lawrie et al.   Genome Biology and Evolution

Climatic, vegetation and cultural change in the eastern Mediterranean during the mid-Holocene environmental transition

(2011) Neil Roberts et al.   HOLOCENE

Role of DREBs in regulation of abiotic stress responses in plants

(2011) C. Lata et al.   JOURNAL OF EXPERIMENTAL BOTANY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Regulatory Hotspots Are Associated with Plant Gene Expression under Varying Soil Phosphorus Supply in Brassica rapa

(2011) J. P. Hammond et al.   PLANT PHYSIOLOGY

Mechanisms Linking Drought, Hydraulics, Carbon Metabolism, and Vegetation Mortality

(2011) N. G. McDowell   PLANT PHYSIOLOGY

Abiotic stress and control of grain number in cereals

(2011) Rudy Dolferus et al.   PLANT SCIENCE

Statistical Design and Analysis of RNA Sequencing Data

(2010) P. L. Auer et al.   GENETICS

Nucleotide diversity patterns of local adaptation at drought-related candidate genes in wild tomatoes

(2010) HUI XIA et al.   MOLECULAR ECOLOGY

Sensing Sulfur Conditions: Simple to Complex Protein Regulatory Mechanisms in Plant Thiol Metabolism

(2010) Hankuil Yi et al.   Molecular Plant

Genotoxic stress and DNA repair in plants: emerging functions and tools for improving crop productivity

(2010) Alma Balestrazzi et al.   PLANT CELL REPORTS

Molecular and Physiological Analysis of Drought Stress in Arabidopsis Reveals Early Responses Leading to Acclimation in Plant Growth

(2010) A. Harb et al.   PLANT PHYSIOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage

(2009) Peiguo Guo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Elucidating the role of genetic drift and natural selection in cork oak differentiation regarding drought tolerance

(2009) J. A. RAMÍREZ-VALIENTE et al.   MOLECULAR ECOLOGY

Strong correlation of wild barley (Hordeum spontaneum) population structure with temperature and precipitation variation

(2009) S. HÜBNER et al.   MOLECULAR ECOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Drought tolerance improvement in crop plants: An integrated view from breeding to genomics

(2007) Luigi Cattivelli et al.   FIELD CROPS RESEARCH