Genome-wide analyses of the Bemisia tabaci species complex reveal contrasting patterns of admixture and complex demographic histories

The Trouble with MEAM2: Implications of Pseudogenes on Species Delimitation in the Globally Invasive Bemisia tabaci (Hemiptera: Aleyrodidae) Cryptic Species Complex

(2017) Wee Tek Tay et al.   Genome Biology and Evolution

Genome sequencing of the sweetpotato whitefly Bemisia tabaci MED/Q

(2017) Wen Xie et al.   GigaScience

Using NextRAD sequencing to infer movement of herbivores among host plants

(2017) Zhen Fu et al.   PLoS One

The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

(2016) Wenbo Chen et al.   BMC BIOLOGY

Further insight into reproductive incompatibility between putative cryptic species of theBemisia tabaciwhitefly complex

(2016) Li Qin et al.   Insect Science

Demographic history of speciation in aSenecioaltitudinal hybrid zone on Mt. Etna

(2016) Dmitry A. Filatov et al.   MOLECULAR ECOLOGY

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants

(2016) Guo-Qian Yang et al.   Plant Methods

The devil is in the details: genetic variation in introduced populations and its contributions to invasion

(2015) Katrina M. Dlugosch et al.   MOLECULAR ECOLOGY

From promise to practice: pairing non-invasive sampling with genomics in conservation

(2015) Michael A. Russello et al.   PeerJ

Estimation of the Whitefly Bemisia tabaci Genome Size Based on k-mer and Flow Cytometric Analyses

(2015) Wenbo Chen et al.   Insects

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

(2014) Deren A. R. Eaton   BIOINFORMATICS

ngsTools: methods for population genetics analyses from next-generation sequencing data

(2014) Matteo Fumagalli et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Mitochondrial, nuclear, and endosymbiotic diversity of two recently introduced populations of the invasiveBemisia tabaciMED species in La Réunion

(2014) Magali Thierry et al.   Insect Conservation and Diversity

A new record forBemisia tabaci(Gennadius) (Hemiptera: Aleyrodidae) species complex of Turkey

(2014) K. Karut et al.   JOURNAL OF APPLIED ENTOMOLOGY

Complete mitochondrial DNA genome ofBemisia tabacicryptic pest species complex Asia I (Hemiptera: Aleyrodidae)

(2014) W. T. Tay et al.   Mitochondrial DNA

Genomic Analyses of Three Malaria Vectors Reveals Extensive Shared Polymorphism but Contrasting Population Histories

(2014) Samantha M. O’Loughlin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Application of RAD-based phylogenetics to complex relationships among variously related taxa in a species flock

(2014) Tetsumi Takahashi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Is agriculture driving the diversification of the Bemisia tabaci species complex (Hemiptera: Sternorrhyncha: Aleyrodidae)?: Dating, diversification and biogeographic evidence revealed

(2013) Laura M Boykin et al.   BMC EVOLUTIONARY BIOLOGY

Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data

(2013) Matteo Fumagalli et al.   GENETICS

Going where traditional markers have not gone before: utility of and promise for RAD sequencing in marine invertebrate phylogeography and population genomics

(2013) A. M. Reitzel et al.   MOLECULAR ECOLOGY

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

(2013) B. Arnold et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Revisiting comparisons of genetic diversity in stable and declining species: assessing genome-wide polymorphism in North American bumble bees using RAD sequencing

(2013) J. D. Lozier   MOLECULAR ECOLOGY

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Genome-wide patterns of divergence and gene flow across a butterfly radiation

(2012) Nicola J. Nadeau et al.   MOLECULAR ECOLOGY

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

(2012) Catherine E. Wagner et al.   MOLECULAR ECOLOGY

Will the Real Bemisia tabaci Please Stand Up?

(2012) Wee Tek Tay et al.   PLoS One

Impacts of biological invasions: what's what and the way forward

(2012) Daniel Simberloff et al.   TRENDS IN ECOLOGY & EVOLUTION

Species Concepts as Applied to the Whitefly Bemisia tabaci Systematics: How Many Species Are There?

(2012) Shu-sheng LIU et al.   Journal of Integrative Agriculture

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Genetic diversity, geographical range and origin of Bemisia tabaci (Hemiptera: Aleyrodidae) Indian Ocean Ms

(2011) H. Delatte et al.   BULLETIN OF ENTOMOLOGICAL RESEARCH

Symbiont diversity and non-random hybridization among indigenous (Ms) and invasive (B) biotypes of Bemisia tabaci

(2011) M. THIERRY et al.   MOLECULAR ECOLOGY

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

(2011) PAUL A. HOHENLOHE et al.   Molecular Ecology Resources

Applications of next-generation sequencing to phylogeography and phylogenetics

(2011) John E. McCormack et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Climate change and evolutionary adaptation

(2011) Ary A. Hoffmann et al.   NATURE

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads

(2011) Paul D. Etter et al.   PLoS One

Refined Global Analysis of Bemisia tabaci (Hemiptera: Sternorrhyncha: Aleyrodoidea: Aleyrodidae) Mitochondrial Cytochrome Oxidase 1 to Identify Species Level Genetic Boundaries

(2010) A. Dinsdale et al.   ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA

Bemisia tabaci: A Statement of Species Status

(2010) Paul J. De Barro et al.   Annual Review of Entomology

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Resolving postglacial phylogeography using high-throughput sequencing

(2010) K. J. Emerson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Distribution and molecular characterization of distinct Asian populations ofBemisia tabaci(Hemiptera: Aleyrodidae) in Japan

(2009) S. Ueda et al.   JOURNAL OF APPLIED ENTOMOLOGY

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Harnessing genomics for evolutionary insights

(2009) Antonis Rokas et al.   TRENDS IN ECOLOGY & EVOLUTION

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Adaptive evolution in invasive species

(2008) Peter J. Prentis et al.   TRENDS IN PLANT SCIENCE