Revisiting comparisons of genetic diversity in stable and declining species: assessing genome-wide polymorphism in North American bumble bees using RAD sequencing

‘Next generation’ biogeography: towards understanding the drivers of species diversification and persistence

(2013) Christian Lexer et al.   JOURNAL OF BIOGEOGRAPHY

Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing

(2013) Paul A. Hohenlohe et al.   MOLECULAR ECOLOGY

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

(2013) B. Arnold et al.   MOLECULAR ECOLOGY

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

Characterizing genic and nongenic molecular markers: comparison of microsatellites and SNPs

(2013) Jacquelin DeFaveri et al.   Molecular Ecology Resources

Plant-Pollinator Interactions over 120 Years: Loss of Species, Co-Occurrence, and Function

(2013) L. A. Burkle et al.   SCIENCE

Adaptive Evolution of Multiple Traits Through Multiple Mutations at a Single Gene

(2013) C. R. Linnen et al.   SCIENCE

Serial Founder Effects During Range Expansion: A Spatial Analog of Genetic Drift

(2012) M. Slatkin et al.   GENETICS

Molecular evolutionary and population genomic analysis of the nine-spined stickleback using a modified restriction-site-associated DNA tag approach

(2012) Matthieu Bruneaux et al.   MOLECULAR ECOLOGY

The effect of RAD allele dropout on the estimation of genetic variation within and between populations

(2012) Mathieu Gautier et al.   MOLECULAR ECOLOGY

Special features of RAD Sequencing data: implications for genotyping

(2012) John W. Davey et al.   MOLECULAR ECOLOGY

Genome-wide association genetics of an adaptive trait in lodgepole pine

(2012) THOMAS L. PARCHMAN et al.   MOLECULAR ECOLOGY

Population genomics of Pacific lamprey: adaptive variation in a highly dispersive species

(2012) Jon E. Hess et al.   MOLECULAR ECOLOGY

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data

(2012) Rasmus Nielsen et al.   PLoS One

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A second generation genetic map of the bumblebee Bombus terrestris (Linnaeus, 1758) reveals slow genome and chromosome evolution in the Apidae

(2011) Eckart Stolle et al.   BMC GENOMICS

RADSeq: next-generation population genetics

(2011) J. W. Davey et al.   Briefings in Functional Genomics

A Hierarchical Bayesian Model for Next-Generation Population Genomics

(2011) Z. Gompert et al.   GENETICS

Patterns of range-wide genetic variation in six North American bumble bee (Apidae: Bombus) species

(2011) JEFFREY D. LOZIER et al.   MOLECULAR ECOLOGY

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

(2011) PAUL A. HOHENLOHE et al.   Molecular Ecology Resources

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Patterns of widespread decline in North American bumble bees

(2011) S. A. Cameron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of a normalised expressed sequence tag (EST) library from a key pollinator, the bumblebee Bombus terrestris

(2010) Ben M Sadd et al.   BMC GENOMICS

The Confounding Effects of Population Structure, Genetic Diversity and the Sampling Scheme on the Detection and Quantification of Population Size Changes

(2010) L. Chikhi et al.   GENETICS

Multi-locus inference of population structure: a comparison between single nucleotide polymorphisms and microsatellites

(2010) R J Haasl et al.   HEREDITY

A Genomic Portrait of Human Microsatellite Variation

(2010) B. A. Payseur et al.   MOLECULAR BIOLOGY AND EVOLUTION

Conservation genetics, foraging distance and nest density of the scarce Great Yellow Bumblebee (Bombus distinguendus)

(2010) THOMAS G. CHARMAN et al.   MOLECULAR ECOLOGY

On the use of large marker panels to estimate inbreeding and relatedness: empirical and simulation studies of a pedigreed zebra finch population typed at 771 SNPs

(2010) ANNA W. SANTURE et al.   MOLECULAR ECOLOGY

Estimation of bumblebee queen dispersal distances using sibship reconstruction method

(2010) OLIVIER LEPAIS et al.   MOLECULAR ECOLOGY

How many SNPs are enough?

(2010) PETER E. SMOUSE   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera

(2010) M. C. Munoz-Torres et al.   NUCLEIC ACIDS RESEARCH

Resolving postglacial phylogeography using high-throughput sequencing

(2010) K. J. Emerson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic diversity, parasite prevalence and immunity in wild bumblebees

(2010) P. R. Whitehorn et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Conservation genetics in transition to conservation genomics

(2010) N. Joop Ouborg et al.   TRENDS IN GENETICS

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Bee genetics and conservation

(2009) Amro Zayed   APIDOLOGIE

Bumblebee vulnerability and conservation world-wide

(2009) Paul H. Williams et al.   APIDOLOGIE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Impacts of inbreeding on bumblebee colony fitness under field conditions

(2009) Penelope R Whitehorn et al.   BMC EVOLUTIONARY BIOLOGY

Bumblebee Vulnerability: Common Correlates of Winners and Losers across Three Continents

(2009) PAUL WILLIAMS et al.   CONSERVATION BIOLOGY

Neglect of Genetic Diversity in Implementation of the Convention on Biological Diversity

(2009) LINDA LAIKRE et al.   CONSERVATION BIOLOGY

The Impact of Sampling Schemes on the Site Frequency Spectrum in Nonequilibrium Subdivided Populations

(2009) T. Stadler et al.   GENETICS

Comparative genetic analyses of historical and contemporary collections highlight contrasting demographic histories for the bumble beesBombus pensylvanicusandB.impatiensin Illinois

(2009) JEFFREY D. LOZIER et al.   MOLECULAR ECOLOGY

Novel microsatellite DNA loci forBombus terrestris(Linnaeus, 1758)

(2009) ECKART STOLLE et al.   Molecular Ecology Resources

Assessing statistical power of SNPs for population structure and conservation studies

(2009) PHILLIP A. MORIN et al.   Molecular Ecology Resources

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Evidence for decline in eastern North American bumblebees (Hymenoptera: Apidae), with special focus on Bombus affinis Cresson

(2008) Sheila R. Colla et al.   BIODIVERSITY AND CONSERVATION

Decline of bumble bees (Bombus) in the North American Midwest

(2008) Jennifer C. Grixti et al.   BIOLOGICAL CONSERVATION

Enhanced cross-species utility of conserved microsatellite markers in shorebirds

(2008) Clemens Küpper et al.   BMC GENOMICS

Interspecific Patterns of Genetic Diversity in Birds: Correlations with Extinction Risk

(2008) SIMON R. EVANS et al.   CONSERVATION BIOLOGY

Male flight distance and population substructure in the bumblebeeBombus terrestris

(2008) F. B. Kraus et al.   JOURNAL OF ANIMAL ECOLOGY

To what extent do microsatellite markers reflect genome-wide genetic diversity in natural populations?

(2008) ÜLO VÄLI et al.   MOLECULAR ECOLOGY

GSTand its relatives do not measure differentiation

(2008) LOU JOST   MOLECULAR ECOLOGY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Decline and Conservation of Bumble Bees

(2007) D. Goulson et al.   Annual Review of Entomology