The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance

No evidence for extensive horizontal gene transfer in the genome of the tardigradeHypsibius dujardini

(2016) Georgios Koutsovoulos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cellular and molecular remodelling of a host cell for vertical transmission of bacterial symbionts

(2016) Jun-Bo Luan et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype

(2015) Aris Ilias et al.   BMC GENOMICS

Genome reduction and potential metabolic complementation of the dual endosymbionts in the whitefly Bemisia tabaci

(2015) Qiong Rao et al.   BMC GENOMICS

Metabolic Coevolution in the Bacterial Symbiosis of Whiteflies and Related Plant Sap-Feeding Insects

(2015) Jun-Bo Luan et al.   Genome Biology and Evolution

Three Members of the Bemisia tabaci (Hemiptera: Aleyrodidae) Cryptic Species Complex Occur Sympatrically in Argentine Horticultural Crops

(2015) V. Alemandri et al.   JOURNAL OF ECONOMIC ENTOMOLOGY

Cassava brown streak disease: a threat to food security in Africa

(2015) Basavaprabhu L. Patil et al.   JOURNAL OF GENERAL VIROLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Evidence for extensive horizontal gene transfer from the draft genome of a tardigrade

(2015) Thomas C. Boothby et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Expression of multiple horizontally acquired genes is a hallmark of both vertebrate and invertebrate genomes

(2015) Alastair Crisp et al.   GENOME BIOLOGY

Estimation of the Whitefly Bemisia tabaci Genome Size Based on k-mer and Flow Cytometric Analyses

(2015) Wenbo Chen et al.   Insects

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

A substrate ambiguous enzyme facilitates genome reduction in an intracellular symbiont

(2014) Daniel RG Price et al.   BMC BIOLOGY

Transcriptomic analyses reveal the adaptive features and biological differences of guts from two invasive whitefly species

(2014) Xiao-Dong Ye et al.   BMC GENOMICS

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

(2014) Rei Kajitani et al.   GENOME RESEARCH

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Dynamics of biotypes B and Q of the whiteflyBemisia tabaciand its impact on insecticide resistance

(2014) Abraham Rami Horowitz et al.   PEST MANAGEMENT SCIENCE

Biology and management ofBemisiawhitefly vectors of cassava virus pandemics in Africa

(2014) James P Legg et al.   PEST MANAGEMENT SCIENCE

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

A review of the mechanisms and components that determine the transmission efficiency of Tomato yellow leaf curl virus (Geminiviridae; Begomovirus) by its whitefly vector

(2014) Murad Ghanim   VIRUS RESEARCH

A global alliance declaring war on cassava viruses in Africa

(2014) James Legg et al.   Food Security

Comparison of the Genome Sequences of “Candidatus Portiera aleyrodidarum” Primary Endosymbionts of the Whitefly Bemisia tabaci B and Q Biotypes

(2013) Zi-Feng Jiang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bemisia tabacinomenclature: lessons learned

(2013) Laura M Boykin   PEST MANAGEMENT SCIENCE

Analysis of a native whitefly transcriptome and its sequence divergence with two invasive whitefly species

(2012) Xiao-Wei Wang et al.   BMC GENOMICS

Survey of Reproductive Host Plants ofBemisia tabaci(Hemiptera: Aleyrodidae) in Egypt, Including New Host Records

(2012) Shaaban Abd-Rabou et al.   ENTOMOLOGICAL NEWS

Draft Genome Sequence of "Candidatus Hamiltonella defensa," an Endosymbiont of the Whitefly Bemisia tabaci

(2012) Q. Rao et al.   JOURNAL OF BACTERIOLOGY

Draft Genome Sequence of Rickettsia sp. Strain MEAM1, Isolated from the Whitefly Bemisia tabaci

(2012) Q. Rao et al.   JOURNAL OF BACTERIOLOGY

Hybrid error correction and de novo assembly of single-molecule sequencing reads

(2012) Sergey Koren et al.   NATURE BIOTECHNOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Factors Affecting Population Dynamics of Maternally Transmitted Endosymbionts in Bemisia tabaci

(2012) Huipeng Pan et al.   PLoS One

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

Species Concepts as Applied to the Whitefly Bemisia tabaci Systematics: How Many Species Are There?

(2012) Shu-sheng LIU et al.   Journal of Integrative Agriculture

Dengue Virus Infection of the Aedes aegypti Salivary Gland and Chemosensory Apparatus Induces Genes that Modulate Infection and Blood-Feeding Behavior

(2012) Shuzhen Sim et al.   PLoS Pathogens

Quake: quality-aware detection and correction of sequencing errors

(2012) David R Kelley et al.   GENOME BIOLOGY

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Sterol Regulation of Metabolism, Homeostasis, and Development

(2011) Joshua Wollam et al.   Annual Review of Biochemistry

Emerging Virus Diseases Transmitted by Whiteflies

(2011) Jesús Navas-Castillo et al.   Annual Review of Phytopathology

Transcriptome analysis and comparison reveal divergence between two invasive whitefly cryptic species

(2011) Xiao-Wei Wang et al.   BMC GENOMICS

Insights into the transcriptomics of polyphagy: Bemisia tabaci adaptability to phenylpropanoids involves coordinated expression of defense and metabolic genes

(2011) Michal Alon et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Global Analysis of the Transcriptional Response of Whitefly to Tomato Yellow Leaf Curl China Virus Reveals the Relationship of Coevolved Adaptations

(2011) J.-B. Luan et al.   JOURNAL OF VIROLOGY

Top 10 plant viruses in molecular plant pathology

(2011) KAREN-BETH G. SCHOLTHOF et al.   MOLECULAR PLANT PATHOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Comparing the regional epidemiology of the cassava mosaic and cassava brown streak virus pandemics in Africa

(2011) J.P. Legg et al.   VIRUS RESEARCH

Refined Global Analysis of Bemisia tabaci (Hemiptera: Sternorrhyncha: Aleyrodoidea: Aleyrodidae) Mitochondrial Cytochrome Oxidase 1 to Identify Species Level Genetic Boundaries

(2010) A. Dinsdale et al.   ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA

Bemisia tabaci: A Statement of Species Status

(2010) Paul J. De Barro et al.   Annual Review of Entomology

Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology

(2010) Thomas D. Otto et al.   BIOINFORMATICS

De novo characterization of a whitefly transcriptome and analysis of its gene expression during development

(2010) Xiao-Wei Wang et al.   BMC GENOMICS

Plant sterols and host plant suitability for a phloem-feeding insect

(2010) Spencer T. Behmer et al.   FUNCTIONAL ECOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences

(2010) Y. Han et al.   NUCLEIC ACIDS RESEARCH

Genome Sequence of the Pea Aphid Acyrthosiphon pisum

(2010)   PLOS BIOLOGY

The Spread of Tomato Yellow Leaf Curl Virus from the Middle East to the World

(2010) Pierre Lefeuvre et al.   PLoS Pathogens

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Improved DNA Barcoding Method for Bemisia tabaci and Related Aleyrodidae: Development of Universal and Bemisia tabaci Biotype-Specific Mitochondrial Cytochrome c Oxidase I Polymerase Chain Reaction Primers

(2009) Robert G. Shatters et al.   JOURNAL OF ECONOMIC ENTOMOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Hydroxylation of naphthalene by aromatic peroxygenase from Agrocybe aegerita proceeds via oxygen transfer from H2O2 and intermediary epoxidation

(2008) Martin Kluge et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Direct mapping and alignment of protein sequences onto genomic sequence

(2008) Osamu Gotoh   BIOINFORMATICS

Role of fungal peroxidases in biological ligninolysis

(2008) K HAMMEL et al.   CURRENT OPINION IN PLANT BIOLOGY

The presence ofRickettsiais associated with increased susceptibility ofBemisia tabaci(Homoptera: Aleyrodidae) to insecticides

(2008) Svetlana Kontsedalov et al.   PEST MANAGEMENT SCIENCE

Massive Horizontal Gene Transfer in Bdelloid Rotifers

(2008) E. A. Gladyshev et al.   SCIENCE