Plant DNA metabarcoding of lake sediments: How does it represent the contemporary vegetation

Ancient plant DNA in lake sediments

(2017) Laura Parducci et al.   NEW PHYTOLOGIST

The History of Tree and Shrub Taxa on Bol'shoy Lyakhovsky Island (New Siberian Archipelago) since the Last Interglacial Uncovered by Sedimentary Ancient DNA and Pollen Data

(2017) Heike Zimmermann et al.   Genes

Understanding environmental DNA detection probabilities: A case study using a stream-dwelling char Salvelinus fontinalis

(2016) Taylor M. Wilcox et al.   BIOLOGICAL CONSERVATION

From barcodes to genomes: extending the concept of DNA barcoding

(2016) Eric Coissac et al.   MOLECULAR ECOLOGY

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

Postglacial viability and colonization in North America’s ice-free corridor

(2016) Mikkel W. Pedersen et al.   NATURE

Lake sedimentary DNA accurately records 20thCentury introductions of exotic conifers in Scotland

(2016) Per Sjögren et al.   NEW PHYTOLOGIST

A high-throughput belowground plant diversity assay using next-generation sequencing of the trnL intron

(2016) E. G. Lamb et al.   PLANT AND SOIL

Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers

(2016) Nicole A. Fahner et al.   PLoS One

Does pollen-assemblage richness reflect floristic richness? A review of recent developments and future challenges

(2016) H. John B. Birks et al.   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

Hybridization Capture Using RAD Probes (hyRAD), a New Tool for Performing Genomic Analyses on Collection Specimens

(2016) Tomasz Suchan et al.   PLoS One

Choice of capture and extraction methods affect detection of freshwater biodiversity from environmental DNA

(2015) Kristy Deiner et al.   BIOLOGICAL CONSERVATION

Quantifying effects of UV-B, temperature, and pH on eDNA degradation in aquatic microcosms

(2015) Katherine M. Strickler et al.   BIOLOGICAL CONSERVATION

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

The ecology of environmental DNA and implications for conservation genetics

(2015) Matthew A. Barnes et al.   CONSERVATION GENETICS

Modeling false positive detections in species occurrence data under different study designs

(2015) Thierry Chambert et al.   ECOLOGY

Sedimentary ancient DNA from Lake Skartjørna, Svalbard: Assessing the resilience of arctic flora to Holocene climate change

(2015) Inger Greve Alsos et al.   HOLOCENE

The current and future applications of ancient DNA in Quaternary science

(2015) TERENCE A. BROWN et al.   JOURNAL OF QUATERNARY SCIENCE

Origin, dynamics, and implications of extracellular DNA pools in marine sediments

(2015) Andrea Torti et al.   Marine Genomics

Reconstructing long-term human impacts on plant communities: an ecological approach based on lake sediment DNA

(2015) Johan Pansu et al.   MOLECULAR ECOLOGY

Statistical approaches to account for false-positive errors in environmental DNA samples

(2015) José J. Lahoz-Monfort et al.   Molecular Ecology Resources

Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding

(2015) Nathan T. Evans et al.   Molecular Ecology Resources

obitools: aunix-inspired software package for DNA metabarcoding

(2015) Frédéric Boyer et al.   Molecular Ecology Resources

How have studies of ancient DNA from sediments contributed to the reconstruction of Quaternary floras?

(2015) H. John B. Birks et al.   NEW PHYTOLOGIST

Lake Store Finnsjøen – a key for understanding Lateglacial/early Holocene vegetation and ice sheet dynamics in the central Scandes Mountains

(2015) Aage Paus et al.   QUATERNARY SCIENCE REVIEWS

Lake sediment multi-taxon DNA from North Greenland records early post-glacial appearance of vascular plants and accurately tracks environmental changes

(2015) L.S. Epp et al.   QUATERNARY SCIENCE REVIEWS

Sedimentary DNA from a submerged site reveals wheat in the British Isles 8000 years ago

(2015) Oliver Smith et al.   SCIENCE

Contesting the presence of wheat in the British Isles 8,000 years ago by assessing ancient DNA authenticity from low-coverage data

(2015) Clemens L Weiß et al.   eLife

Highly Overlapping Winter Diet in Two Sympatric Lemming Species Revealed by DNA Metabarcoding

(2015) Eeva M. Soininen et al.   PLoS One

Using Ancient DNA to Understand Evolutionary and Ecological Processes

(2014) Ludovic Orlando et al.   Annual Review of Ecology Evolution and Systematics

Environmental Conditions Influence eDNA Persistence in Aquatic Systems

(2014) Matthew A. Barnes et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Using palaeoenvironmental DNA to reconstruct past environments: progress and prospects

(2014) NICOLAS J. RAWLENCE et al.   JOURNAL OF QUATERNARY SCIENCE

Universal and blocking primer mismatches limit the use of high-throughput DNA sequencing for the quantitative metabarcoding of arthropods

(2014) J. Piñol et al.   Molecular Ecology Resources

Efficient and sensitive identification and quantification of airborne pollen using next-generation DNA sequencing

(2014) Ken Kraaijeveld et al.   Molecular Ecology Resources

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

(2014) Gentile F. Ficetola et al.   Molecular Ecology Resources

Fifty thousand years of Arctic vegetation and megafaunal diet

(2014) Eske Willerslev et al.   NATURE

Parsing ecological signal from noise in next generation amplicon sequencing

(2014) Nhu H. Nguyen et al.   NEW PHYTOLOGIST

Proxy comparison in ancient peat sediments: pollen, macrofossil and plant DNA

(2014) L. Parducci et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ancient and modern environmental DNA

(2014) Mikkel Winther Pedersen et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Transport Distance of Invertebrate Environmental DNA in a Natural River

(2014) Kristy Deiner et al.   PLoS One

Long livestock farming history and human landscape shaping revealed by lake sediment DNA

(2014) Charline Giguet-Covex et al.   Nature Communications

Use of Pollen and Ancient DNA as Conservation Baselines for Offshore Islands in New Zealand

(2013) JANET M. WILMSHURST et al.   CONSERVATION BIOLOGY

Use of Ancient Sedimentary DNA as a Novel Conservation Tool for High-Altitude Tropical Biodiversity

(2013) SANNE BOESSENKOOL et al.   CONSERVATION BIOLOGY

Molecular- and pollen-based vegetation analysis in lake sediments from central Scandinavia

(2013) Laura Parducci et al.   MOLECULAR ECOLOGY

DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet

(2013) M. De Barba et al.   Molecular Ecology Resources

A comparative study of ancient environmental DNA to pollen and macrofossils from lake sediments reveals taxonomic overlap and additional plant taxa

(2013) Mikkel Winther Pedersen et al.   QUATERNARY SCIENCE REVIEWS

The future of environmental DNA in ecology

(2012) NIGEL G. YOCCOZ   MOLECULAR ECOLOGY

DNA from soil mirrors plant taxonomic and growth form diversity

(2012) N. G. YOCCOZ et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Representation of flora and vegetation in Quaternary fossil assemblages: known and unknown knowns and unknowns

(2012) Stephen T. Jackson   QUATERNARY SCIENCE REVIEWS

Glacial Survival of Boreal Trees in Northern Scandinavia

(2012) L. Parducci et al.   SCIENCE

Comment on "Glacial Survival of Boreal Trees in Northern Scandinavia"

(2012) H. H. Birks et al.   SCIENCE

Response to Comment on "Glacial Survival of Boreal Trees in Northern Scandinavia"

(2012) L. Parducci et al.   SCIENCE

Plant species richness belowground: higher richness and new patterns revealed by next-generation sequencing

(2011) INGA HIIESALU et al.   MOLECULAR ECOLOGY

A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability

(2011) TINA JØRGENSEN et al.   MOLECULAR ECOLOGY

Meta-barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity

(2011) KENNETH ANDERSEN et al.   MOLECULAR ECOLOGY

Choosing and Using a Plant DNA Barcode

(2011) Peter M. Hollingsworth et al.   PLoS One

Palynological richness and pollen sample evenness in relation to local floristic diversity in southern Estonia

(2011) Vivika Meltsov et al.   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

Øvre AEråsvatn - palynostratigraphy of a 22,000 to 10,000 BP lacustrine record on Andøya, northern Norway

(2010) TORBJØRN ALM   BOREAS

Correspondence analysis of raw data

(2010) Michael Greenacre   ECOLOGY

Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate

(2010) J. H. SØNSTEBØ et al.   Molecular Ecology Resources

Can we detect a west Norwegian tree line from modern samples of plant remains and pollen? Results from the DOORMAT project

(2010) Hilary H. Birks et al.   VEGETATION HISTORY AND ARCHAEOBOTANY

Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures

(2009) Eeva M Soininen et al.   Frontiers in Zoology

A DNA barcode for land plants

(2009) et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Holocene vegetation and climate dynamics of the boreal alpine ecotone of northwestern Fennoscandia

(2008) Christin Jensen et al.   JOURNAL OF QUATERNARY SCIENCE