A high-throughput belowground plant diversity assay using next-generation sequencing of the trnL intron

Smooth brome invasion increases rare soil bacterial species prevalence, bacterial species richness and evenness

(2015) Candace L. Piper et al.   JOURNAL OF ECOLOGY

Fine-scale belowground species associations in temperate grassland

(2015) Douglas A. Frank et al.   MOLECULAR ECOLOGY

Next generation sequencing technology: Advances and applications

(2014) H.P.J. Buermans et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Species richness of arbuscular mycorrhizal fungi: associations with grassland plant richness and biomass

(2014) Inga Hiiesalu et al.   NEW PHYTOLOGIST

Parsing ecological signal from noise in next generation amplicon sequencing

(2014) Nhu H. Nguyen et al.   NEW PHYTOLOGIST

The unseen iceberg: plant roots in arctic tundra

(2014) Colleen M. Iversen et al.   NEW PHYTOLOGIST

Smooth brome changes gross soil nitrogen cycling processes during invasion of a rough fescue grassland

(2014) Candace L. Piper et al.   PLANT ECOLOGY

Chloroplast DNA Phylogeography of Holy Basil (Ocimum tenuiflorum) in Indian Subcontinent

(2014) Felix Bast et al.   TheScientificWorldJOURNAL

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Small-scale grassland assembly patterns differ above and below the soil surface

(2012) Jodi N. Price et al.   ECOLOGY

Below-ground plant species richness: new insights from DNA-based methods

(2012) Meelis Pärtel et al.   FUNCTIONAL ECOLOGY

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

An updated consumer’s guide to evenness and related indices

(2012) Hanna Tuomisto   OIKOS

taxonstand: An r package for species names standardisation in vegetation databases

(2012) Luis Cayuela et al.   Methods in Ecology and Evolution

The Behavioral Ecology of Nutrient Foraging by Plants

(2011) James F. Cahill et al.   Annual Review of Ecology Evolution and Systematics

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

A PCR-based method for the identification of the roots of 10 co-occurring grassland species in mesocosm experiments

(2011) Gordon G. McNickle et al.   Botany

Influence of management practices on large herbivore diet—Case of European bison in Białowieża Primeval Forest (Poland)

(2011) Rafał Kowalczyk et al.   FOREST ECOLOGY AND MANAGEMENT

Plant species richness belowground: higher richness and new patterns revealed by next-generation sequencing

(2011) INGA HIIESALU et al.   MOLECULAR ECOLOGY

Spatial patterns of plant diversity below-ground as revealed by DNA barcoding

(2011) PRASAD R. KESANAKURTI et al.   MOLECULAR ECOLOGY

Who is eating what: diet assessment using next generation sequencing

(2011) FRANCOIS POMPANON et al.   MOLECULAR ECOLOGY

Direct measurement of roots in soil for single and mixed species using a quantitative DNA-based method

(2011) Rebecca E. Haling et al.   PLANT AND SOIL

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

New insights on diet variability revealed by DNA barcoding and high-throughput pyrosequencing: chamois diet in autumn as a case study

(2010) Gilles Rayé et al.   ECOLOGICAL RESEARCH

Grassland root communities: species distributions and how they are linked to aboveground abundance

(2010) Douglas A. Frank et al.   ECOLOGY

Reproducibility of species lists, visual cover estimates and frequency methods for recording high-mountain vegetation

(2010) Pascal Vittoz et al.   JOURNAL OF VEGETATION SCIENCE

Molecular identification of roots from a grassland community using size differences in fluorescently labelled PCR amplicons of three cpDNA regions

(2010) JOHN M. TAGGART et al.   Molecular Ecology Resources

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Universal DNA-Based Methods for Assessing the Diet of Grazing Livestock and Wildlife from Feces

(2009) Anthony Pegard et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

A DNA barcode for land plants

(2009) et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA