The RNA-Seq-based high resolution gene expression atlas of chickpea (Cicer arietinum L.) reveals dynamic spatio-temporal changes associated with growth and development

Differential Regulation of Genes Involved in Root Morphogenesis and Cell Wall Modification is Associated with Salinity Tolerance in Chickpea

(2018) Mayank Kaashyap et al.   Scientific Reports

Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation

(2017) Lekha T. Pazhamala et al.   JOURNAL OF EXPERIMENTAL BOTANY

Drought-Responsive Mechanisms in Plant Leaves Revealed by Proteomics

(2016) Xiaoli Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea

(2016) Gaurav Agarwal et al.   PLANT BIOTECHNOLOGY JOURNAL

TheVigna unguiculataGene Expression Atlas (VuGEA) fromde novoassembly and quantification of RNA-seq data provides insights into seed maturation mechanisms

(2016) Shaolun Yao et al.   PLANT JOURNAL

An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development

(2016) Scott C. Stelpflug et al.   Plant Genome

Editorial: Frontiers of Sulfur Metabolism in Plant Growth, Development, and Stress Response

(2016) Stanislav Kopriva et al.   Frontiers in Plant Science

A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea

(2016) Josh Clevenger et al.   Frontiers in Plant Science

Transcriptome analyses reveal genotype- and developmental stage-specific molecular responses to drought and salinity stresses in chickpea

(2016) Rohini Garg et al.   Scientific Reports

Arabidopsis leucine-rich repeat extensin (LRX) proteins modify cell wall composition and influence plant growth

(2015) Christian Draeger et al.   BMC PLANT BIOLOGY

Two key genomic regions harbour QTLs for salinity tolerance in ICCV 2 × JG 11 derived chickpea (Cicer arietinum L.) recombinant inbred lines

(2015) Raju Pushpavalli et al.   BMC PLANT BIOLOGY

Regulation of Photosynthesis during Abiotic Stress-Induced Photoinhibition

(2015) Mayank Anand Gururani et al.   Molecular Plant

Full-lengthde novoassembly of RNA-seq data in pea (Pisum sativumL.) provides a gene expression atlas and gives insights into root nodulation in this species

(2015) Susete Alves-Carvalho et al.   PLANT JOURNAL

Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.)

(2015) Sandip M Kale et al.   Scientific Reports

NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data

(2015) Mohan A. V. S. K. Katta et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Genome-Scale Transcriptomic Insights into Molecular Aspects of Abiotic Stress Responses in Chickpea

(2014) Rohini Garg et al.   PLANT MOLECULAR BIOLOGY REPORTER

Comprehensive Transcriptome Assembly of Chickpea (Cicer arietinum L.) Using Sanger and Next Generation Sequencing Platforms: Development and Applications

(2014) Himabindu Kudapa et al.   PLoS One

Genetic Dissection of Drought and Heat Tolerance in Chickpea through Genome-Wide and Candidate Gene-Based Association Mapping Approaches

(2014) Mahendar Thudi et al.   PLoS One

Candidate gene analysis for determinacy in pigeonpea (Cajanus spp.)

(2014) Reyazul Rouf Mir et al.   THEORETICAL AND APPLIED GENETICS

Genes controlling root development in rice

(2014) Chung D Mai et al.   Rice

Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.)

(2013) Murali Mohan Sabbavarapu et al.   EUPHYTICA

Regulatory modules controlling maize inflorescence architecture

(2013) A. L. Eveland et al.   GENOME RESEARCH

Transcriptome analysis reveals novel genes potentially involved in photoperiodic tuberization in potato

(2013) Jianwei Shan et al.   GENOMICS

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

(2013) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Establishment of theLotus japonicusGene Expression Atlas (LjGEA) and its use to explore legume seed maturation

(2013) Jerome Verdier et al.   PLANT JOURNAL

A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.)

(2013) Mukesh Jain et al.   PLANT JOURNAL

Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.)

(2013) Rajeev K. Varshney et al.   THEORETICAL AND APPLIED GENETICS

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Nutritional quality and health benefits of chickpea (Cicer arietinum L.): a review

(2012) A. K. Jukanti et al.   BRITISH JOURNAL OF NUTRITION

Organ-specific proteomic analysis of drought-stressed soybean seedlings

(2012) Payam Pour Mohammadi et al.   Journal of Proteomics

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Apple 1-Aminocyclopropane-1-Carboxylic Acid Synthase Genes, MdACS1 and MdACS3a, are Expressed in Different Systems of Ethylene Biosynthesis

(2012) Dongmei Tan et al.   PLANT MOLECULAR BIOLOGY REPORTER

De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification

(2011) R. Garg et al.   DNA RESEARCH

Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa

(2011) Pavana J. Hiremath et al.   PLANT BIOTECHNOLOGY JOURNAL

Transcription Reprogramming during Root Nodule Development in Medicago truncatula

(2011) Sandra Moreau et al.   PLoS One

Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.)

(2011) Mahendar Thudi et al.   PLoS One

RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

(2010) Andrew J Severin et al.   BMC PLANT BIOLOGY

Ubiquitin ligase switch in plant photomorphogenesis: A hypothesis

(2010) Alexandra Pokhilko et al.   JOURNAL OF THEORETICAL BIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome

(2010) Spurthi N. Nayak et al.   THEORETICAL AND APPLIED GENETICS

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.)

(2009) Rajeev K Varshney et al.   BMC GENOMICS

Translational Biology: From Arabidopsis Flowers to Grass Inflorescence Architecture

(2009) B. E. Thompson et al.   PLANT PHYSIOLOGY

Transcription factors and regulation of photosynthetic and related metabolism under environmental stresses

(2008) Nelson J. M. Saibo et al.   ANNALS OF BOTANY

Genome-wide identification, classification, evolutionary expansion and expression analyses of homeobox genes in rice

(2008) Mukesh Jain et al.   FEBS Journal

NAD(H)-dependent glutamate dehydrogenase is essential for the survival ofArabidopsis thalianaduring dark-induced carbon starvation

(2008) Yo Miyashita et al.   JOURNAL OF EXPERIMENTAL BOTANY

Calcineurin B-like interacting protein kinase OsCIPK23 functions in pollination and drought stress responses in rice (Oryza sativa L.)

(2008) Wenqiang Yang et al.   Journal of Genetics and Genomics

Regulatory networks that function to specify flower meristems require the function of homeobox genes PENNYWISE and POUND-FOOLISH in Arabidopsis

(2008) Siddhartha Kanrar et al.   PLANT JOURNAL

A gene expression atlas of the model legumeMedicago truncatula

(2008) Vagner A. Benedito et al.   PLANT JOURNAL