Haplotype-based genotyping-by-sequencing in oat genome research

Genome size variation in the genus Avena

(2016) Honghai Yan et al.   GENOME

pcadapt: anRpackage to perform genome scans for selection based on principal component analysis

(2016) Keurcien Luu et al.   Molecular Ecology Resources

Population structure and genome-wide association analysis for frost tolerance in oat using continuous SNP array signal intensity ratios

(2016) Giorgio Tumino et al.   THEORETICAL AND APPLIED GENETICS

High-density marker profiling confirms ancestral genomes of Avena species and identifies D-genome chromosomes of hexaploid oat

(2016) Honghai Yan et al.   THEORETICAL AND APPLIED GENETICS

Isolation-by-distance-and-time in a stepping-stone model

(2016) Nicolas Duforet-Frebourg et al.   THEORETICAL POPULATION BIOLOGY

Haplotag: Software for Haplotype-Based Genotyping-by-Sequencing Analysis

(2016) Nicholas A. Tinker et al.   G3-Genes Genomes Genetics

Genome-Wide Association Studies of Grain Yield Components in Diverse Sorghum Germplasm

(2016) Richard E. Boyles et al.   Plant Genome

A Consensus Map in Cultivated Hexaploid Oat Reveals Conserved Grass Synteny with Substantial Subgenome Rearrangement

(2016) Ashley S. Chaffin et al.   Plant Genome

Genomic Selection for Processing and End-Use Quality Traits in the CIMMYT Spring Bread Wheat Breeding Program

(2016) Sarah D. Battenfield et al.   Plant Genome

Population Genomics Related to Adaptation in Elite Oat Germplasm

(2016) Kathy Esvelt Klos et al.   Plant Genome

Detecting Genomic Signatures of Natural Selection with Principal Component Analysis: Application to the 1000 Genomes Data

(2015) Nicolas Duforet-Frebourg et al.   MOLECULAR BIOLOGY AND EVOLUTION

LinkImpute: Fast and Accurate Genotype Imputation for Nonmodel Organisms

(2015) Daniel Money et al.   G3-Genes Genomes Genetics

A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes

(2015) Katherine W Jordan et al.   GENOME BIOLOGY

Genomic prediction of genetic merit using LD-based haplotypes in the Nordic Holstein population

(2015) Beatriz CD Cuyabano et al.   BMC GENOMICS

Genomic prediction in biparental tropical maize populations in water-stressed and well-watered environments using low-density and GBS SNPs

(2014) X Zhang et al.   HEREDITY

Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array

(2014) Shichen Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Using Genotyping-By-Sequencing (GBS) for Genomic Discovery in Cultivated Oat

(2014) Yung-Fen Huang et al.   PLoS One

Training set optimization under population structure in genomic selection

(2014) Julio Isidro et al.   THEORETICAL AND APPLIED GENETICS

A SNP Genotyping Array for Hexaploid Oat

(2014) Nicholas A. Tinker et al.   Plant Genome

Genome-wide association mapping of frost tolerance in barley (Hordeum vulgare L.)

(2013) Andrea Visioni et al.   BMC GENOMICS

Genetic Diversity and Population Structure Among Oat Cultivars and Landraces

(2013) G. Montilla-Bascón et al.   PLANT MOLECULAR BIOLOGY REPORTER

SNP Discovery and Chromosome Anchoring Provide the First Physically-Anchored Hexaploid Oat Map and Reveal Synteny with Model Species

(2013) Rebekah E. Oliver et al.   PLoS One

Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars

(2013) C. R. Cavanagh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic rearrangements and the evolution of clusters of locally adaptive loci

(2013) S. Yeaman   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-genome sequencing reveals untapped genetic potential in Africa’s indigenous cereal crop sorghum

(2013) Emma S. Mace et al.   Nature Communications

Imputation of Unordered Markers and the Impact on Genomic Selection Accuracy

(2013) Jessica E. Rutkoski et al.   G3-Genes Genomes Genetics

Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol

(2013) Fei Lu et al.   PLoS Genetics

Estimating the Strength of Selective Sweeps from Deep Population Diversity Data

(2012) P. W. Messer et al.   GENETICS

Tagging and mapping candidate loci for vernalization and flower initiation in hexaploid oat

(2012) Itamar C. Nava et al.   MOLECULAR BREEDING

A physical, genetic and functional sequence assembly of the barley genome

(2012)   NATURE

Genome-Wide Haplotype Changes Produced by Artificial Selection during Modern Rice Breeding in Japan

(2012) Jun-ichi Yonemaru et al.   PLoS One

Sequence-Based Genotyping for Marker Discovery and Co-Dominant Scoring in Germplasm and Populations

(2012) Hoa T. Truong et al.   PLoS One

Population genomic and genome-wide association studies of agroclimatic traits in sorghum

(2012) G. P. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Shrinkage Estimation of the Realized Relationship Matrix

(2012) Jeffrey B. Endelman et al.   G3-Genes Genomes Genetics

Genomic Selection in Wheat Breeding using Genotyping-by-Sequencing

(2012) Jesse Poland et al.   Plant Genome

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Accuracy of genomic selection in European maize elite breeding populations

(2011) Yusheng Zhao et al.   THEORETICAL AND APPLIED GENETICS

Factors Affecting the Power of Haplotype Markers in Association Studies

(2011) Martha T. Hamblin et al.   Plant Genome

Accuracy and Training Population Design for Genomic Selection on Quantitative Traits in Elite North American Oats

(2011) Franco G. Asoro et al.   Plant Genome

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Performance of Single Nucleotide Polymorphisms versus Haplotypes for Genome-Wide Association Analysis in Barley

(2010) Aaron J. Lorenz et al.   PLoS One

New DArT markers for oat provide enhanced map coverage and global germplasm characterization

(2009) Nicholas A Tinker et al.   BMC GENOMICS