Using Genotyping-By-Sequencing (GBS) for Genomic Discovery in Cultivated Oat

An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley

(2014) Hui Liu et al.   BMC GENOMICS

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Saturated linkage map construction in Rubus idaeus using genotyping by sequencing and genome-independent imputation

(2013) Judson A Ward et al.   BMC GENOMICS

Genomic, Marker-Assisted, and Pedigree-BLUP Selection Methods for β-Glucan Concentration in Elite Oat

(2013) Franco G. Asoro et al.   CROP SCIENCE

Marker Density and Read Depth for Genotyping Populations Using Genotyping-by-Sequencing

(2013) T. M. Beissinger et al.   GENETICS

SNPMeta: SNP annotation and SNP metadata collection without a reference genome

(2013) Thomas J. Y. Kono et al.   Molecular Ecology Resources

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)

(2013) Martin Mascher et al.   PLANT JOURNAL

An Improved Genotyping by Sequencing (GBS) Approach Offering Increased Versatility and Efficiency of SNP Discovery and Genotyping

(2013) Humira Sonah et al.   PLoS One

SNP Discovery and Chromosome Anchoring Provide the First Physically-Anchored Hexaploid Oat Map and Reveal Synteny with Model Species

(2013) Rebekah E. Oliver et al.   PLoS One

A Next-Generation Sequencing Method for Genotyping-by-Sequencing of Highly Heterozygous Autotetraploid Potato

(2013) Jan G. A. M. L. Uitdewilligen et al.   PLoS One

Application of Genotyping-by-Sequencing on Semiconductor Sequencing Platforms: A Comparison of Genetic and Reference-Based Marker Ordering in Barley

(2013) Martin Mascher et al.   PLoS One

Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations

(2013) Jennifer Spindel et al.   THEORETICAL AND APPLIED GENETICS

Sequence-Based Mapping of the Polyploid Wheat Genome

(2013) Cyrille Saintenac et al.   G3-Genes Genomes Genetics

Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol

(2013) Fei Lu et al.   PLoS Genetics

Genomics of gene banks: A case study in rice

(2012) Susan R. McCouch et al.   AMERICAN JOURNAL OF BOTANY

Genomewide Selection versus Marker-assisted Recurrent Selection to Improve Grain Yield and Stover-quality Traits for Cellulosic Ethanol in Maize

(2012) Jon M. Massman et al.   CROP SCIENCE

A developmental profile of tocol accumulation in oat seeds

(2012) Juan J. Gutierrez-Gonzalez et al.   JOURNAL OF CEREAL SCIENCE

Genotyping-by-Sequencing for Plant Breeding and Genetics

(2012) Jesse A. Poland et al.   Plant Genome

Genomic Selection in Wheat Breeding using Genotyping-by-Sequencing

(2012) Jesse Poland et al.   Plant Genome

Model SNP development for complex genomes based on hexaploid oat using high-throughput 454 sequencing technology

(2011) Rebekah E Oliver et al.   BMC GENOMICS

Novel measures of linkage disequilibrium that correct the bias due to population structure and relatedness

(2011) B Mangin et al.   HEREDITY

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Combining Mixture Components for Clustering

(2010) Jean-Patrick Baudry et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

Genotype imputation for genome-wide association studies

(2010) Jonathan Marchini et al.   NATURE REVIEWS GENETICS

Population structure and linkage disequilibrium in oat (Avena sativa L.): implications for genome-wide association studies

(2010) M. A. Newell et al.   THEORETICAL AND APPLIED GENETICS

New DArT markers for oat provide enhanced map coverage and global germplasm characterization

(2009) Nicholas A Tinker et al.   BMC GENOMICS

A First-Generation Haplotype Map of Maize

(2009) M. A. Gore et al.   SCIENCE

Population structure and genetic diversity of New World maize races assessed by DNA microsatellites

(2008) Y. Vigouroux et al.   AMERICAN JOURNAL OF BOTANY

Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph

(2008) Yonghui Wu et al.   PLoS Genetics