Genome-Wide Haplotype Changes Produced by Artificial Selection during Modern Rice Breeding in Japan

Core single-nucleotide polymorphisms—a tool for genetic analysis of the Japanese rice population

(2011) Hideki Nagasaki et al.   BREEDING SCIENCE

Discovery of Genome-Wide DNA Polymorphisms in a Landrace Cultivar of Japonica Rice by Whole-Genome Sequencing

(2011) Yuko Arai-Kichise et al.   PLANT AND CELL PHYSIOLOGY

Artificial selection for a green revolution gene during japonica rice domestication

(2011) K. Asano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Uncovering of major genetic factors generating naturally occurring variation in heading date among Asian rice cultivars

(2011) Kaworu Ebana et al.   THEORETICAL AND APPLIED GENETICS

Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms

(2010) Toshio Yamamoto et al.   BMC GENOMICS

Genetic structure revealed by a whole-genome single-nucleotide polymorphism survey of diverse accessions of cultivated Asian rice (Oryza sativa L.)

(2010) Kaworu Ebana et al.   BREEDING SCIENCE

Multiple introgression events surrounding the Hd1 flowering-time gene in cultivated rice, Oryza sativa L.

(2010) Kenji Fujino et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Pdk1 Kinase Regulates Basal Disease Resistance Through the OsOxi1–OsPti1a Phosphorylation Cascade in Rice

(2010) Hidenori Matsui et al.   PLANT AND CELL PHYSIOLOGY

Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome

(2010) Keyan Zhao et al.   PLoS One

Genetic diversity and population structure of a diverse set of rice germplasm for association mapping

(2010) Liang Jin et al.   THEORETICAL AND APPLIED GENETICS

Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred lines

(2010) Lu Wang et al.   THEORETICAL AND APPLIED GENETICS

Q-TARO: QTL Annotation Rice Online Database

(2010) Jun-ichi Yonemaru et al.   Rice

Towards the Understanding of Complex Traits in Rice: Substantially or Superficially?

(2009) T. Yamamoto et al.   DNA RESEARCH

High-throughput genotyping by whole-genome resequencing

(2009) X. Huang et al.   GENOME RESEARCH

Defect in non-yellow coloring 3, an α/β hydrolase-fold family protein, causes a stay-green phenotype during leaf senescence in rice

(2009) Ryouhei Morita et al.   PLANT JOURNAL

Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice

(2009) Y. Takahashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

(2009) K. L. McNally et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Novel NAC Transcription Factor, IDEF2, That Recognizes the Iron Deficiency-responsive Element 2 Regulates the Genes Involved in Iron Homeostasis in Plants

(2008) Yuko Ogo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

OsPHR2 Is Involved in Phosphate-Starvation Signaling and Excessive Phosphate Accumulation in Shoots of Plants

(2008) J. Zhou et al.   PLANT PHYSIOLOGY