A sigma factor toolbox for orthogonal gene expression in Escherichia coli

The whole set of the constitutive promoters recognized by four minor sigma subunits of Escherichia coli RNA polymerase

(2017) Tomohiro Shimada et al.   PLoS One

Recursive DNA Assembly Using Protected Oligonucleotide Duplex Assisted Cloning (PODAC)

(2017) Bob Van Hove et al.   ACS Synthetic Biology

Microbial production of natural and non-natural flavonoids: Pathway engineering, directed evolution and systems/synthetic biology

(2016) Ramesh Prasad Pandey et al.   BIOTECHNOLOGY ADVANCES

Recent trends in metabolic engineering of microorganisms for the production of advanced biofuels

(2016) Seungwoo Cheon et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Tailor-made transcriptional biosensors for optimizing microbial cell factories

(2016) Brecht De Paepe et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Tools and Principles for Microbial Gene Circuit Engineering

(2016) Robert W. Bradley et al.   JOURNAL OF MOLECULAR BIOLOGY

Metabolic Burden: Cornerstones in Synthetic Biology and Metabolic Engineering Applications

(2016) Gang Wu et al.   TRENDS IN BIOTECHNOLOGY

Impact of synthetic biology and metabolic engineering on industrial production of fine chemicals

(2015) David Jullesson et al.   BIOTECHNOLOGY ADVANCES

Metabolic pathway balancing and its role in the production of biofuels and chemicals

(2015) J Andrew Jones et al.   CURRENT OPINION IN BIOTECHNOLOGY

Multivariate modular engineering of the protein secretory pathway for production of heterologous glucose oxidase in Pichia pastoris

(2015) Lei Gu et al.   ENZYME AND MICROBIAL TECHNOLOGY

ePathOptimize: A Combinatorial Approach for Transcriptional Balancing of Metabolic Pathways

(2015) J. Andrew Jones et al.   Scientific Reports

When plants produce not enough or at all: metabolic engineering of flavonoids in microbial hosts

(2015) Emmanouil A. Trantas et al.   Frontiers in Plant Science

grofit: Fitting Biological Growth Curves withR

(2015) Matthias Kahm et al.   Journal of Statistical Software

Toehold Switches: De-Novo-Designed Regulators of Gene Expression

(2014) Alexander A. Green et al.   CELL

One step DNA assembly for combinatorial metabolic engineering

(2014) Pieter Coussement et al.   METABOLIC ENGINEERING

A 'resource allocator' for transcription based on a highly fragmented T7 RNA polymerase

(2014) T. H. Segall-Shapiro et al.   Molecular Systems Biology

Semi-synthetic artemisinin: a model for the use of synthetic biology in pharmaceutical development

(2014) Chris J. Paddon et al.   NATURE REVIEWS MICROBIOLOGY

PaperClip: rapid multi-part DNA assembly from existing libraries

(2014) Maryia Trubitsyna et al.   NUCLEIC ACIDS RESEARCH

Directed Evolution of a Panel of Orthogonal T7 RNA Polymerase Variants for in Vivo or in Vitro Synthetic Circuitry

(2014) Adam J. Meyer et al.   ACS Synthetic Biology

Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression

(2013) Lei S. Qi et al.   CELL

Multivariate modular metabolic engineering of Escherichia coli to produce resveratrol from l-tyrosine

(2013) Junjun Wu et al.   JOURNAL OF BIOTECHNOLOGY

Metabolic engineering for high yielding L(-)-carnitine production in Escherichia coli

(2013) Paula Arense et al.   Microbial Cell Factories

Design of orthogonal genetic switches based on a crosstalk map of  s, anti- s, and promoters

(2013) V. A. Rhodius et al.   Molecular Systems Biology

High-level semi-synthetic production of the potent antimalarial artemisinin

(2013) C. J. Paddon et al.   NATURE

Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs

(2013) Dokyun Na et al.   NATURE BIOTECHNOLOGY

Genomic mining of prokaryotic repressors for orthogonal logic gates

(2013) Brynne C Stanton et al.   Nature Chemical Biology

Precise and reliable gene expression via standard transcription and translation initiation elements

(2013) Vivek K Mutalik et al.   NATURE METHODS

Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system

(2013) David Bikard et al.   NUCLEIC ACIDS RESEARCH

Combinatorial Engineering of 1-Deoxy-D-Xylulose 5-Phosphate Pathway Using Cross-Lapping In Vitro Assembly (CLIVA) Method

(2013) Ruiyang Zou et al.   PLoS One

Library of synthetic transcriptional AND gates built with split T7 RNA polymerase mutants

(2013) D. L. Shis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic Engineering: Past and Future

(2013) Benjamin M. Woolston et al.   Annual Review of Chemical and Biomolecular Engineering

Modular optimization of multi-gene pathways for fatty acids production in E. coli

(2013) Peng Xu et al.   Nature Communications

Engineering the push and pull of lipid biosynthesis in oleaginous yeast Yarrowia lipolytica for biofuel production

(2012) Mitchell Tai et al.   METABOLIC ENGINEERING

The anti-Shine–Dalgarno sequence drives translational pausing and codon choice in bacteria

(2012) Gene-Wei Li et al.   NATURE

Foundations for the design and implementation of synthetic genetic circuits

(2012) Adrian L. Slusarczyk et al.   NATURE REVIEWS GENETICS

Modular control of multiple pathways using engineered orthogonal T7 polymerases

(2012) Karsten Temme et al.   NUCLEIC ACIDS RESEARCH

SLiCE: a novel bacterial cell extract-based DNA cloning method

(2012) Yongwei Zhang et al.   NUCLEIC ACIDS RESEARCH

An Engineered Microbial Platform for Direct Biofuel Production from Brown Macroalgae

(2012) A. J. Wargacki et al.   SCIENCE

Tuning Promoter Strength through RNA Polymerase Binding Site Design in Escherichia coli

(2012) Robert C. Brewster et al.   PLoS Computational Biology

Promoter knock-in: a novel rational method for the fine tuning of genes

(2010) Marjan De Mey et al.   BMC BIOTECHNOLOGY

Manipulating redox and ATP balancing for improved production of succinate in E. coli

(2010) Amarjeet Singh et al.   METABOLIC ENGINEERING

The Bacillus subtilis σM regulon and its contribution to cell envelope stress responses

(2010) Warawan Eiamphungporn et al.   MOLECULAR MICROBIOLOGY

Design, construction and characterization of a set of insulated bacterial promoters

(2010) J. H. Davis et al.   NUCLEIC ACIDS RESEARCH

Manufacturing Molecules Through Metabolic Engineering

(2010) J. D. Keasling   SCIENCE

Isoprenoid Pathway Optimization for Taxol Precursor Overproduction in Escherichia coli

(2010) P. K. Ajikumar et al.   SCIENCE

Stabilized gene duplication enables long-term selection-free heterologous pathway expression

(2009) Keith E J Tyo et al.   NATURE BIOTECHNOLOGY

Automated design of synthetic ribosome binding sites to control protein expression

(2009) Howard M Salis et al.   NATURE BIOTECHNOLOGY

Circular Polymerase Extension Cloning of Complex Gene Libraries and Pathways

(2009) Jiayuan Quan et al.   PLoS One

Synthesis of orthogonal transcription-translation networks

(2009) W. An et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toward scalable parts families for predictable design of biological circuits

(2008) Julius B Lucks et al.   CURRENT OPINION IN MICROBIOLOGY

Engineering Complex Riboswitch Regulation by Dual Genetic Selection

(2008) Vandana Sharma et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY