Soil environment is a key driver of adaptation in Medicago truncatula : new insights from landscape genomics

Spatial detection of outlier loci with Moran eigenvector maps

(2017) Helene H. Wagner et al.   Molecular Ecology Resources

WRKY domain-encoding genes of a crop legume chickpea (Cicer arietinum): comparative analysis withMedicago truncatulaWRKY family and characterization of group-III gene(s)

(2016) Kamal Kumar et al.   DNA RESEARCH

The role of locally adapted mycorrhizas and rhizobacteria in plant-soil feedback systems

(2016) Daniel Revillini et al.   FUNCTIONAL ECOLOGY

Plant adaptation or acclimation to rising CO2? Insight from first multigenerational RNA-Seq transcriptome

(2016) Alexander Watson-Lazowski et al.   GLOBAL CHANGE BIOLOGY

Signatures of local adaptation in candidate genes of oaks (Quercusspp.) with respect to present and future climatic conditions

(2016) Christian Rellstab et al.   MOLECULAR ECOLOGY

Controlling false discoveries in genome scans for selection

(2016) Olivier François et al.   MOLECULAR ECOLOGY

Adaptation to climate through flowering phenology: a case study inMedicago truncatula

(2016) Concetta Burgarella et al.   MOLECULAR ECOLOGY

Influence of extreme weather disasters on global crop production

(2016) Corey Lesk et al.   NATURE

Coming of age: ten years of next-generation sequencing technologies

(2016) Sara Goodwin et al.   NATURE REVIEWS GENETICS

Nitrogen deposition decreases the benefits of symbiosis in a native legume

(2016) J. U. Regus et al.   PLANT AND SOIL

Ecological genomics of mutualism decline in nitrogen-fixing bacteria

(2016) Christie R. Klinger et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Copper Trafficking in Plants and Its Implication on Cell Wall Dynamics

(2016) Bruno Printz et al.   Frontiers in Plant Science

Spatiotemporal drought variability in the Mediterranean over the last 900 years

(2016) Benjamin I. Cook et al.   JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES

Plant Adaptation to Acid Soils: The Molecular Basis for Crop Aluminum Resistance

(2015) Leon V. Kochian et al.   Annual Review of Plant Biology

Biological nitrogen fixation and biomass production stability in alfalfa (Medicago sativaL.) genotypes under organic management conditions

(2015) Ali Moghaddam et al.   BIOLOGICAL AGRICULTURE & HORTICULTURE

Combined biotic and abiotic stress resistance in tomato

(2015) Christos Kissoudis et al.   EUPHYTICA

Long-term nitrogen addition causes the evolution of less-cooperative mutualists

(2015) Dylan J. Weese et al.   EVOLUTION

The F-box family genes as key elements in response to salt, heavy mental, and drought stresses in Medicago truncatula

(2015) Jian Bo Song et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genomic Signature of Selective Sweeps Illuminates Adaptation ofMedicago truncatulato Root-Associated Microorganisms

(2015) Maxime Bonhomme et al.   MOLECULAR BIOLOGY AND EVOLUTION

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

Genomic resources and their influence on the detection of the signal of positive selection in genome scans

(2015) S. Manel et al.   MOLECULAR ECOLOGY

Genomic variation across landscapes: insights and applications

(2015) Jason G. Bragg et al.   NEW PHYTOLOGIST

Climatic conditions, soil fertility and atmospheric nitrogen deposition largely determine the structure and functioning of microbial communities in biocrust-dominated Mediterranean drylands

(2015) Raúl Ochoa-Hueso et al.   PLANT AND SOIL

Role of Arginine decarboxylase (ADC) inArabidopsis thalianadefence against the pathogenic bacteriumPseudomonas viridiflava

(2015) F. R. Rossi et al.   PLANT BIOLOGY

Genome-wide association of drought-related and biomass traits with HapMap SNPs inMedicago truncatula

(2015) Yun Kang et al.   PLANT CELL AND ENVIRONMENT

Crucial roles of the pentatricopeptide repeat protein SOAR1 in Arabidopsis response to drought, salt and cold stresses

(2015) Shang-Chuan Jiang et al.   PLANT MOLECULAR BIOLOGY

Evolutionary signals of symbiotic persistence in the legume–rhizobia mutualism

(2015) Gijsbert D. A. Werner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Loss of the nodule-specific cysteine rich peptide, NCR169, abolishes symbiotic nitrogen fixation in theMedicago truncatula dnf7mutant

(2015) Beatrix Horváth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Taxonomic, spatial and adaptive genetic variation of Beta section Beta

(2015) Marco Andrello et al.   THEORETICAL AND APPLIED GENETICS

Are we ready for back-to-nature crop breeding?

(2015) Michael G. Palmgren et al.   TRENDS IN PLANT SCIENCE

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

Suitable Days for Plant Growth Disappear under Projected Climate Change: Potential Human and Biotic Vulnerability

(2015) Camilo Mora et al.   PLOS BIOLOGY

Breeding and Domesticating Crops Adapted to Drought and Salinity: A New Paradigm for Increasing Food Production

(2015) Ana Fita et al.   Frontiers in Plant Science

Old World megadroughts and pluvials during the Common Era

(2015) E. R. Cook et al.   Science Advances

The ecological genomic basis of salinity adaptation in Tunisian Medicago truncatula

(2015) Maren L Friesen et al.   BMC GENOMICS

Consequence of altered nitrogen cycles in the coupled human and ecological system under changing climate: The need for long-term and site-based research

(2014) Hideaki Shibata et al.   AMBIO

Pentatricopeptide Repeat Proteins in Plants

(2014) Alice Barkan et al.   Annual Review of Plant Biology

An improved genome release (version Mt4.0) for the model legume Medicago truncatula

(2014) Haibao Tang et al.   BMC GENOMICS

Cysteine protease and cystatin expression and activity during soybean nodule development and senescence

(2014) Stefan George van Wyk et al.   BMC PLANT BIOLOGY

Ecological genomics meets community-level modelling of biodiversity: mapping the genomic landscape of current and future environmental adaptation

(2014) Matthew C. Fitzpatrick et al.   ECOLOGY LETTERS

Genomic Signature of Adaptation to Climate inMedicago truncatula

(2014) Jeremy B. Yoder et al.   GENETICS

Natural Variation in Abiotic Stress Responsive Gene Expression and Local Adaptation to Climate in Arabidopsis thaliana

(2014) Jesse R. Lasky et al.   MOLECULAR BIOLOGY AND EVOLUTION

From Receptor-Like Kinases to Calcium Spikes: What Are the Missing Links?

(2014) Feng Yu et al.   Molecular Plant

Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations

(2014) Luke M Evans et al.   NATURE GENETICS

Lab to Farm: Applying Research on Plant Genetics and Genomics to Crop Improvement

(2014) Pamela C. Ronald   PLOS BIOLOGY

Local and Systemic Regulation of Plant Root System Architecture and Symbiotic Nodulation by a Receptor-Like Kinase

(2014) Emeline Huault et al.   PLoS Genetics

Tolerance to drought and salt stress in plants: Unraveling the signaling networks

(2014) Dortje Golldack et al.   Frontiers in Plant Science

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

Uncovering the genetic basis of adaptive change: on the intersection of landscape genomics and theoretical population genetics

(2013) Stéphane Joost et al.   MOLECULAR ECOLOGY

Candidate Genes and Genetic Architecture of Symbiotic and Agronomic Traits Revealed by Whole-Genome, Sequence-Based Association Genetics in Medicago truncatula

(2013) John Stanton-Geddes et al.   PLoS One

Assessing agricultural risks of climate change in the 21st century in a global gridded crop model intercomparison

(2013) Cynthia Rosenzweig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Late Embryogenesis Abundant (LEA) proteins in legumes

(2013) Marina Battaglia et al.   Frontiers in Plant Science

Adaptive Genetic Variation on the Landscape: Methods and Cases

(2012) Sean D. Schoville et al.   Annual Review of Ecology Evolution and Systematics

Receptor Kinase Signaling Pathways in Plant-Microbe Interactions

(2012) Meritxell Antolín-Llovera et al.   Annual Review of Phytopathology

The interaction of plant biotic and abiotic stresses: from genes to the field

(2012) N. J. Atkinson et al.   JOURNAL OF EXPERIMENTAL BOTANY

Broad-scale adaptive genetic variation in alpine plants is driven by temperature and precipitation

(2012) STÉPHANIE MANEL et al.   MOLECULAR ECOLOGY

Pseudomonas viridiflava, a Multi Host Plant Pathogen with Significant Genetic Variation at the Molecular Level

(2012) Panagiotis F. Sarris et al.   PLoS One

Soil Nitrogen Availability and Plant Genotype Modify the Nutrition Strategies of M. truncatula and the Associated Rhizosphere Microbial Communities

(2012) Anouk Zancarini et al.   PLoS One

Increasing drought under global warming in observations and models

(2012) Aiguo Dai   Nature Climate Change

Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize

(2011) Hongyan Xing et al.   BMC GENOMICS

What should the genome-wide significance threshold be? Empirical replication of borderline genetic associations

(2011) Orestis A Panagiotou et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

The Medicago genome provides insight into the evolution of rhizobial symbioses

(2011) Nevin D. Young et al.   NATURE

Forest tree genomics: growing resources and applications

(2011) David B. Neale et al.   NATURE REVIEWS GENETICS

Membrane Transport, Sensing and Signaling in Plant Adaptation to Environmental Stress

(2011) A. Conde et al.   PLANT AND CELL PHYSIOLOGY

Plant adaptation to frequent alterations between high and low temperatures: remodelling of membrane lipids and maintenance of unsaturation levels

(2011) GUOWEI ZHENG et al.   PLANT CELL AND ENVIRONMENT

Diversity and Activity of Free-Living Nitrogen-Fixing Bacteria and Total Bacteria in Organic and Conventionally Managed Soils

(2010) Caroline H. Orr et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

Isolation and characterisation of cell wall polysaccharides from legume by-products: Okara (soymilk residue), pea pod and broad bean pod

(2010) I. Mateos-Aparicio et al.   FOOD CHEMISTRY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field

(2010) STÉPHANIE MANEL et al.   MOLECULAR ECOLOGY

Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils

(2010) Thomas L Turner et al.   NATURE GENETICS

Breeding Technologies to Increase Crop Production in a Changing World

(2010) M. Tester et al.   SCIENCE

Land ahead: using genome scans to identify molecular markers of adaptive relevance

(2009) Rolf Holderegger et al.   Plant Ecology & Diversity

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS