Ecological genomics of mutualism decline in nitrogen-fixing bacteria

Cheaters must prosper: reconciling theoretical and empirical perspectives on cheating in mutualism

(2015) Emily I. Jones et al.   ECOLOGY LETTERS

Commentary: When does understanding phenotypic evolution require identification of the underlying genes?

(2015) Mark D. Rausher et al.   EVOLUTION

Long-term nitrogen addition causes the evolution of less-cooperative mutualists

(2015) Dylan J. Weese et al.   EVOLUTION

Genomic and phenotypic differentiation among Methanosarcina mazei populations from Columbia River sediment

(2015) Nicholas D Youngblut et al.   ISME Journal

The Sinorhizobium meliloti SyrM Regulon: Effects on Global Gene Expression Are Mediated bysyrAandnodD3

(2015) Melanie J. Barnett et al.   JOURNAL OF BACTERIOLOGY

Bacterial genospecies that are not ecologically coherent: population genomics of Rhizobium leguminosarum

(2015) N. Kumar et al.   Open Biology

Genomic Heterogeneity and Ecological Speciation within One Subspecies of Bacillus subtilis

(2014) Sarah Kopac et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

ITEP: An integrated toolkit for exploration of microbial pan-genomes

(2014) Matthew N Benedict et al.   BMC GENOMICS

Selection for cheating across disparate environments in the legume-rhizobium mutualism

(2014) Stephanie S. Porter et al.   ECOLOGY LETTERS

Recombination Shapes Genome Architecture in an Organism from the Archaeal Domain

(2014) David J. Krause et al.   Genome Biology and Evolution

Explaining microbial genomic diversity in light of evolutionary ecology

(2014) Otto X. Cordero et al.   NATURE REVIEWS MICROBIOLOGY

Efficiency of partner choice and sanctions in Lotus is not altered by nitrogen fertilization

(2014) J. U. Regus et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Transport and Metabolism in Legume-Rhizobia Symbioses

(2013) Michael Udvardi et al.   Annual Review of Plant Biology

EXPLAINING MUTUALISM VARIATION: A NEW EVOLUTIONARY PARADOX?

(2013) Katy D. Heath et al.   EVOLUTION

TOWARD AN EVOLUTIONARY DEFINITION OF CHEATING

(2013) Melanie Ghoul et al.   EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

One hundred years of solitude: integrating single-strain inoculations with community perspectives in the legume-rhizobium symbiosis

(2013) Maren L. Friesen et al.   NEW PHYTOLOGIST

Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter

(2013) S. K. Sheppard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary origins and diversification of proteobacterial mutualists

(2013) J. L. Sachs et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Rethinking Mutualism Stability: Cheaters and the Evolution of Sanctions

(2013) Megan E. Frederickson   QUARTERLY REVIEW OF BIOLOGY

Horizontal gene transfer and the evolution of bacterial and archaeal population structure

(2013) Martin F. Polz et al.   TRENDS IN GENETICS

Algal endosymbionts as vectors of horizontal gene transfer in photosynthetic eukaryotes

(2013) Huan Qiu et al.   Frontiers in Plant Science

Nitrogenase assembly

(2012) Yilin Hu et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Coevolutionary genetic variation in the legume-rhizobium transcriptome

(2012) KATY D. HEATH et al.   MOLECULAR ECOLOGY

Widespread fitness alignment in the legume-rhizobium symbiosis

(2012) Maren L. Friesen   NEW PHYTOLOGIST

An Integrated Pipeline for de Novo Assembly of Microbial Genomes

(2012) Andrew Tritt et al.   PLoS One

Plant-activated bacterial receptor adenylate cyclases modulate epidermal infection in the Sinorhizobium meliloti-Medicago symbiosis

(2012) C. F. Tian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population Genomics of Early Events in the Ecological Differentiation of Bacteria

(2012) B. J. Shapiro et al.   SCIENCE

Measuring the fitness of symbiotic rhizobia

(2012) William C. Ratcliff et al.   SYMBIOSIS

Patterns of Gene Flow Define Species of Thermophilic Archaea

(2012) Hinsby Cadillo-Quiroz et al.   PLOS BIOLOGY

Toward almost closed genomes with GapFiller

(2012) Marten Boetzer et al.   GENOME BIOLOGY

The Genetics of Symbiotic Nitrogen Fixation: Comparative Genomics of 14 Rhizobia Strains by Resolution of Protein Clusters

(2012) Michael Black et al.   Genes

Negotiation, Sanctions, and Context Dependency in the Legume-Rhizobium Mutualism

(2011) Erol Akçay et al.   AMERICAN NATURALIST

Geographic adaptation in plant-soil mutualisms: tests using Acacia spp. and rhizobial bacteria

(2011) Luke G. Barrett et al.   FUNCTIONAL ECOLOGY

The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome

(2011) Susanne Schneiker-Bekel et al.   JOURNAL OF BIOTECHNOLOGY

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Evolutionary Instability of Symbiotic Function in Bradyrhizobium japonicum

(2011) Joel L. Sachs et al.   PLoS One

The biological reality of host sanctions and partner fidelity

(2011) E. T. Kiers et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New paradigms for the evolution of beneficial infections

(2011) Joel L. Sachs et al.   TRENDS IN ECOLOGY & EVOLUTION

Conserved Mutations in the Pneumococcal Bacteriocin Transporter Gene, blpA, Result in a Complex Population Consisting of Producers and Cheaters

(2011) M. R. Son et al.   mBio

Mutualisms in a changing world: an evolutionary perspective

(2010) E. Toby Kiers et al.   ECOLOGY LETTERS

AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature

(2010) Vincent J Denef et al.   ISME Journal

Mutualism variation in the nodulation response to nitrate

(2010) K. D. HEATH et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Ongoing coevolution in mycorrhizal interactions

(2010) Jason D. Hoeksema   NEW PHYTOLOGIST

Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers.

(2010) Wayne Reeve et al.   Standards in Genomic Sciences

Processing and population genetic analysis of multigenic datasets with ProSeq3 software

(2009) D. A. Filatov   BIOINFORMATICS

Resource stoichiometry elucidates the structure and function of arbuscular mycorrhizas across scales

(2009) Nancy Collins Johnson   NEW PHYTOLOGIST

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Isolation by Distance in the Spore-Forming Soil Bacterium Myxococcus xanthus

(2008) Michiel Vos et al.   CURRENT BIOLOGY

Comparative genomics: the bacterial pan-genome

(2008) Hervé Tettelin et al.   CURRENT OPINION IN MICROBIOLOGY

STABILIZING MECHANISMS IN A LEGUME-RHIZOBIUM MUTUALISM

(2008) Katy D. Heath et al.   EVOLUTION

A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data

(2008) Anke Becker et al.   JOURNAL OF BIOTECHNOLOGY

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION