Bias in Ligation-Based Small RNA Sequencing Library Construction Is Determined by Adaptor and RNA Structure

Evaluating bias-reducing protocols for RNA sequencing library preparation

(2014) Thomas J Jackson et al.   BMC GENOMICS

Structural bias in T4 RNA ligase-mediated 3′-adapter ligation

(2012) Fanglei Zhuang et al.   NUCLEIC ACIDS RESEARCH

Barcoding bias in high-throughput multiplex sequencing of miRNA

(2011) S. Alon et al.   GENOME RESEARCH

MicroRNAs and their roles in mammalian stem cells

(2011) R. Yi et al.   JOURNAL OF CELL SCIENCE

Identification and remediation of biases in the activity of RNA ligases in small-RNA deep sequencing

(2011) Anitha D. Jayaprakash et al.   NUCLEIC ACIDS RESEARCH

A bias-reducing strategy in profiling small RNAs using Solexa

(2011) G. Sun et al.   RNA

Sequencing bias: comparison of different protocols of MicroRNA library construction

(2010) Geng Tian et al.   BMC BIOTECHNOLOGY

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Small silencing RNAs: an expanding universe

(2009) Megha Ghildiyal et al.   NATURE REVIEWS GENETICS

EcI5, a group IIB intron with high retrohoming frequency: DNA target site recognition and use in gene targeting

(2009) F. Zhuang et al.   RNA

The Vienna RNA Websuite

(2008) A. R. Gruber et al.   NUCLEIC ACIDS RESEARCH

Computational analysis of small RNA cloning data

(2007) Philipp Berninger et al.   METHODS

Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing

(2007) Markus Hafner et al.   METHODS