Genome-wide DNA methylation signatures of infection status in Trinidadian guppies (Poecilia reticulata )

Modulation of innate immune responses and induction of oxidative stress biomarkers in Pangasianodon hypophthalmus following an experimental infection with dactylogyrid monogeneans

(2017) Saurav Kumar et al.   FISH & SHELLFISH IMMUNOLOGY

Epigenetics in natural animal populations

(2017) J. Hu et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Parallel epigenetic modifications induced by hatchery rearing in a Pacific salmon

(2017) Jérémy Le Luyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resolving host–pathogen interactions by dual RNA-seq

(2017) Alexander J. Westermann et al.   PLoS Pathogens

The Genome of the Trinidadian Guppy, Poecilia reticulata, and Variation in the Guanapo Population

(2017) Axel Künstner et al.   PLoS One

Atlantic salmon populations reveal adaptive divergence of immune related genes - a duplicated genome under selection

(2016) Erik Kjærner-Semb et al.   BMC GENOMICS

RANK as a therapeutic target in cancer

(2016) Eva González-Suárez et al.   FEBS Journal

Genetic sources of population epigenomic variation

(2016) Aaron Taudt et al.   NATURE REVIEWS GENETICS

Impact of host sex and group composition on parasite dynamics in experimental populations

(2016) C. P. TADIRI et al.   PARASITOLOGY

Epigenetics: A New Model for Intracellular Parasite–Host Cell Regulation

(2016) W. Robert McMaster et al.   TRENDS IN PARASITOLOGY

Genome-wide methylation analysis identified sexually dimorphic methylated regions in hybrid tilapia

(2016) Zi Yi Wan et al.   Scientific Reports

Host-parasite interactions: an intimate epigenetic relationship

(2015) Kevin Cheeseman et al.   CELLULAR MICROBIOLOGY

Understanding the ecology and evolution of host-parasite interactions across scales

(2015) Rachel M. Penczykowski et al.   Evolutionary Applications

Migration-related phenotypic divergence is associated with epigenetic modifications in rainbow trout

(2015) Melinda R. Baerwald et al.   MOLECULAR ECOLOGY

DNA methylation profiling: comparison of genome-wide sequencing methods and the Infinium Human Methylation 450 Bead Chip

(2015) Denise L Walker et al.   Epigenomics

Pathogens Hijack the Epigenome

(2014) Natalie C. Silmon de Monerri et al.   AMERICAN JOURNAL OF PATHOLOGY

Thiamin Function, Metabolism, Uptake, and Transport

(2014) Sergio Manzetti et al.   BIOCHEMISTRY

genomation: a toolkit to summarize, annotate and visualize genomic intervals

(2014) A. Akalin et al.   BIOINFORMATICS

Meta-analysis of human methylation data for evidence of sex-specific autosomal patterns

(2014) Nina S McCarthy et al.   BMC GENOMICS

Transgenerational Epigenetic Inheritance: Myths and Mechanisms

(2014) Edith Heard et al.   CELL

The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

(2014) Dirk Gevers et al.   Cell Host & Microbe

Fine-scale population epigenetic structure in relation to gastrointestinal parasite load in red grouse (Lagopus lagopus scotica)

(2014) Marius A. Wenzel et al.   MOLECULAR ECOLOGY

Toxoplasma gondii infection reduces predator aversion in rats through epigenetic modulation in the host medial amygdala

(2014) Shantala Arundhati Hari Dass et al.   MOLECULAR ECOLOGY

Dual RNA-seq of Parasite and Host Reveals Gene Expression Dynamics during Filarial Worm–Mosquito Interactions

(2014) Young-Jun Choi et al.   PLoS Neglected Tropical Diseases

Leishmania donovani Infection Causes Distinct Epigenetic DNA Methylation Changes in Host Macrophages

(2014) Alexandra K. Marr et al.   PLoS Pathogens

How epigenetic mutations can affect genetic evolution: Model and mechanism

(2013) Filippos D. Klironomos et al.   BIOESSAYS

An optimized algorithm for detecting and annotating regional differential methylation

(2013) Sheng Li et al.   BMC BIOINFORMATICS

Ecological Epigenetics: Beyond MS-AFLP

(2013) A. W. Schrey et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

TNXB Mutations Can Cause Vesicoureteral Reflux

(2013) R. A. Gbadegesin et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Experimental elimination of parasites in nature leads to the evolution of increased resistance in hosts

(2013) F. Dargent et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bridging the transgenerational gap with epigenetic memory

(2013) Jana P. Lim et al.   TRENDS IN GENETICS

Host Cell Transcriptome Profile during Wild-Type and Attenuated Dengue Virus Infection

(2013) October M. Sessions et al.   PLoS Neglected Tropical Diseases

Waterborne zinc alters temporal dynamics of guppy Poecilia reticulata epidermal response to Gyrodactylus turnbulli (Monogenea)

(2012) C Gheorghiu et al.   DISEASES OF AQUATIC ORGANISMS

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

(2012) N. Rohland et al.   GENOME RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Reversible switching between epigenetic states in honeybee behavioral subcastes

(2012) Brian R Herb et al.   NATURE NEUROSCIENCE

Understanding transgenerational epigenetic inheritance via the gametes in mammals

(2012) Lucia Daxinger et al.   NATURE REVIEWS GENETICS

Functions of DNA methylation: islands, start sites, gene bodies and beyond

(2012) Peter A. Jones   NATURE REVIEWS GENETICS

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

Are host–parasite interactions influenced by adaptation to predators? A test with guppies and Gyrodactylus in experimental stream channels

(2012) Felipe Pérez-Jvostov et al.   OECOLOGIA

Adding parasites to the guppy-predation story: insights from field surveys

(2012) Kiyoko M. Gotanda et al.   OECOLOGIA

Relative host body condition and food availability influence epidemic dynamics: a Poecilia reticulata-Gyrodactylus turnbulli host-parasite model

(2012) CHRISTINA P. TADIRI et al.   PARASITOLOGY

Widespread dynamic DNA methylation in response to biotic stress

(2012) R. H. Dowen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transgenerational defense induction and epigenetic inheritance in plants

(2012) Liza M. Holeski et al.   TRENDS IN ECOLOGY & EVOLUTION

Epigenetics of Host–Pathogen Interactions: The Road Ahead and the Road Behind

(2012) Elena Gómez-Díaz et al.   PLoS Pathogens

Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling

(2012) Patrick Boyle et al.   GENOME BIOLOGY

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

(2012) Altuna Akalin et al.   GENOME BIOLOGY

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

Gene expression analyses of immune responses in Atlantic salmon during early stages of infection by salmon louse (Lepeophtheirus salmonis) revealed bi-phasic responses coinciding with the copepod-chalimus transition

(2011) Tariku Markos Tadiso et al.   BMC GENOMICS

Mucosal immunoglobulins and B cells of teleost fish

(2011) Irene Salinas et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Condition-dependent traits as signals of the functionality of vital cellular processes

(2011) Geoffrey E. Hill   ECOLOGY LETTERS

Frontiers in host-parasite ecology and evolution

(2011) STEVE PATERSON et al.   MOLECULAR ECOLOGY

Genetic and Epigenetic Effects of Plant–Pathogen Interactions: An Evolutionary Perspective

(2011) Alex Boyko et al.   Molecular Plant

Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling

(2011) Hongcang Gu et al.   Nature Protocols

Molecular aspects of defence priming

(2011) Uwe Conrath   TRENDS IN PLANT SCIENCE

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

(2010) Lihua J Zhu et al.   BMC BIOINFORMATICS

Making memories that last a lifetime: heritable functions of self-renewing memory CD8 T cells

(2010) B. Youngblood et al.   INTERNATIONAL IMMUNOLOGY

MHC class IIB additive and non-additive effects on fitness measures in the guppyPoecilia reticulata

(2010) B. A. Fraser et al.   JOURNAL OF FISH BIOLOGY

Beyond MHC: signals of elevated selection pressure on Atlantic salmon (Salmo salar) immune-relevant loci

(2010) A. TONTERI et al.   MOLECULAR ECOLOGY

Epigenetic reprogramming of host genes in viral and microbial pathogenesis

(2010) Konstantinos Paschos et al.   TRENDS IN MICROBIOLOGY

Selection at the MHC class IIB locus across guppy (Poecilia reticulata) populations

(2009) B A Fraser et al.   HEREDITY

Genome-scale DNA methylation maps of pluripotent and differentiated cells

(2008) Alexander Meissner et al.   NATURE

DNA methylation landscapes: provocative insights from epigenomics

(2008) Miho M. Suzuki et al.   NATURE REVIEWS GENETICS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Epigenetic effects of infection on the phenotype of host offspring: parasites reaching across host generations

(2008) Robert Poulin et al.   OIKOS

Genotype-by-Environment Interactions and Adaptation to Local Temperature Affect Immunity and Fecundity in Drosophila melanogaster

(2008) Brian P. Lazzaro et al.   PLoS Pathogens