Atlantic salmon populations reveal adaptive divergence of immune related genes - a duplicated genome under selection

Dnd knockout ablates germ cells and demonstrates germ cell independent sex differentiation in Atlantic salmon

(2016) Anna Wargelius et al.   Scientific Reports

Epithelial Cadherin Determines Resistance to Infectious Pancreatic Necrosis Virus in Atlantic Salmon

(2015) Thomas Moen et al.   GENETICS

Sex-dependent dominance at a single locus maintains variation in age at maturity in salmon

(2015) Nicola J. Barson et al.   NATURE

The vgll3 Locus Controls Age at Maturity in Wild and Domesticated Atlantic Salmon (Salmo salar L.) Males

(2015) Fernando Ayllon et al.   PLoS Genetics

Epithelial Cadherin Determines Resistance to Infectious Pancreatic Necrosis Virus in Atlantic Salmon

(2015) Thomas Moen et al.   GENETICS

Extensive Local Gene Duplication and Functional Divergence among Paralogs in Atlantic Salmon

(2014) Ian A. Warren et al.   Genome Biology and Evolution

Genomic evidence for adaptation by gene duplication

(2014) Wenfeng Qian et al.   GENOME RESEARCH

Altered spatio-temporal dynamics of RNase H2 complex assembly at replication and repair sites in Aicardi–Goutières syndrome

(2014) Barbara Kind et al.   HUMAN MOLECULAR GENETICS

Risk assessment of the environmental impact of Norwegian Atlantic salmon farming

(2014) Geir Lasse Taranger et al.   ICES JOURNAL OF MARINE SCIENCE

Evolutionary Analysis Identifies an MX2 Haplotype Associated with Natural Resistance to HIV-1 Infection

(2014) Manuela Sironi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Whole-genome duplication in teleost fishes and its evolutionary consequences

(2014) Stella M. K. Glasauer et al.   MOLECULAR GENETICS AND GENOMICS

Present-Day Genetic Structure of Atlantic Salmon (Salmo salar) in Icelandic Rivers and Ice-Cap Retreat Models

(2014) Kristinn Olafsson et al.   PLoS One

Targeted Mutagenesis in Atlantic Salmon (Salmo salar L.) Using the CRISPR/Cas9 System Induces Complete Knockout Individuals in the F0 Generation

(2014) Rolf B. Edvardsen et al.   PLoS One

Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication

(2014) M. Carneiro et al.   SCIENCE

Trpc2-Expressing Sensory Neurons in the Main Olfactory Epithelium of the Mouse

(2014) Masayo Omura et al.   Cell Reports

Climate Change Influences on Marine Infectious Diseases: Implications for Management and Society

(2013) Colleen A. Burge et al.   Annual Review of Marine Science

An evolutionary perspective on the broad antiviral specificity of MxA

(2013) Patrick S Mitchell et al.   CURRENT OPINION IN MICROBIOLOGY

Innate immune responses of salmonid fish to viral infections

(2013) Bertrand Collet   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

LANDSCAPE GENOMICS IN ATLANTIC SALMON (SALMO SALAR): SEARCHING FOR GENE-ENVIRONMENT INTERACTIONS DRIVING LOCAL ADAPTATION

(2013) Bourret Vincent et al.   EVOLUTION

Phenotype gene expression differences between resistant and susceptible salmon families to IPNV

(2013) C. Cofre et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Estimating and interpreting FST: The impact of rare variants

(2013) G. Bhatia et al.   GENOME RESEARCH

Human MX2 is an interferon-induced post-entry inhibitor of HIV-1 infection

(2013) Caroline Goujon et al.   NATURE

NKAP is a novel RS-related protein that interacts with RNA and RNA binding proteins

(2013) B. D. Burgute et al.   NUCLEIC ACIDS RESEARCH

Finding Markers That Make a Difference: DNA Pooling and SNP-Arrays Identify Population Informative Markers for Genetic Stock Identification

(2013) Mikhail Ozerov et al.   PLoS One

The transcriptional repressor NKAP is required for the development of iNKT cells

(2013) Puspa Thapa et al.   Nature Communications

Rules of Engagement: Molecular Insights from Host-Virus Arms Races

(2012) Matthew D. Daugherty et al.   Annual Review of Genetics

Both antiviral activity and intracellular localization of chicken Mx protein depend on a polymorphism at amino acid position 631

(2012) Keisuke Sasaki et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Evolution-Guided Identification of Antiviral Specificity Determinants in the Broadly Acting Interferon-Induced Innate Immunity Factor MxA

(2012) Patrick S. Mitchell et al.   Cell Host & Microbe

SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar)

(2012) Vincent Bourret et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Three Decades of Farmed Escapees in the Wild: A Spatio-Temporal Analysis of Atlantic Salmon Population Genetic Structure throughout Norway

(2012) Kevin A. Glover et al.   PLoS One

Resolution of ray-finned fish phylogeny and timing of diversification

(2012) T. J. Near et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

Genotype calling and mapping of multisite variants using an Atlantic salmon iSelect SNP array

(2010) Lars Gidskehaug et al.   BIOINFORMATICS

Beyond MHC: signals of elevated selection pressure on Atlantic salmon (Salmo salar) immune-relevant loci

(2010) A. TONTERI et al.   MOLECULAR ECOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Early viral replication and induced or constitutive immunity in rainbow trout families with differential resistance to Infectious hematopoietic necrosis virus (IHNV)

(2009) Maureen K. Purcell et al.   FISH & SHELLFISH IMMUNOLOGY

EVOLUTION FROM FISH TO MAMMALS BY GENE DUPLICATION

(2009) SUSUMU OHNO et al.   HEREDITAS

MHC standing genetic variation and pathogen resistance in wild Atlantic salmon

(2009) M. Dionne et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Demographics and landscape features determine intrariver population structure in Atlantic salmon (Salmo salarL.): the case of the River Moy in Ireland

(2008) E. DILLANE et al.   MOLECULAR ECOLOGY