Dual RNA-seq of Parasite and Host Reveals Gene Expression Dynamics during Filarial Worm–Mosquito Interactions

Mosquito-Parasite Interactions Can Shape Filariasis Transmission Dynamics and Impact Elimination Programs

(2013) Sara M. Erickson et al.   PLoS Neglected Tropical Diseases

Cys2His2 zinc finger protein family: Classification, functions, and major members

(2012) S. V. Razin et al.   BIOCHEMISTRY-MOSCOW

Transcription profiling reveals stage- and function-dependent expression patterns in the filarial nematode Brugia malayi

(2012) Ben-Wen Li et al.   BMC GENOMICS

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

RNA-seq analyses of blood-induced changes in gene expression in the mosquito vector species, Aedes aegypti

(2011) Mariangela Bonizzoni et al.   BMC GENOMICS

Impulse Control: Temporal Dynamics in Gene Transcription

(2011) Nir Yosef et al.   CELL

Controlling and Coordinating Development in Vector-Transmitted Parasites

(2011) K. R. Matthews   SCIENCE

Insect immune responses to nematode parasites

(2011) Julio Cesar Castillo et al.   TRENDS IN PARASITOLOGY

Gender-Associated Genes in Filarial Nematodes Are Important for Reproduction and Potential Intervention Targets

(2011) Ben-Wen Li et al.   PLoS Neglected Tropical Diseases

A Deep Sequencing Approach to Comparatively Analyze the Transcriptome of Lifecycle Stages of the Filarial Worm, Brugia malayi

(2011) Young-Jun Choi et al.   PLoS Neglected Tropical Diseases

Eating at the Table of Another: Metabolomics of Host-Parasite Interactions

(2010) Björn F.C. Kafsack et al.   Cell Host & Microbe

Statistical Design and Analysis of RNA Sequencing Data

(2010) P. L. Auer et al.   GENETICS

Lymphatics in Human Lymphatic Filariasis: In Vitro Models of Parasite-Induced Lymphatic Remodeling

(2010) Sasisekhar Bennuru et al.   Lymphatic Research and Biology

Mosquito Transcriptome Profiles and Filarial Worm Susceptibility in Armigeres subalbatus

(2010) Matthew T. Aliota et al.   PLoS Neglected Tropical Diseases

Development of an In Vivo RNAi Protocol to Investigate Gene Function in the Filarial Nematode, Brugia malayi

(2010) Chuanzhe Song et al.   PLoS Pathogens

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Transcriptomes and pathways associated with infectivity, survival and immunogenicity in Brugia malayi L3

(2009) Ben-Wen Li et al.   BMC GENOMICS

Filariasis and lymphoedema

(2009) K. M. PFARR et al.   PARASITE IMMUNOLOGY

Use of microarray hybridization to identify Brugia genes involved in mosquito infectivity

(2009) Kathryn G. Griffiths et al.   PARASITOLOGY RESEARCH

Brugia malayi Excreted/Secreted Proteins at the Host/Parasite Interface: Stage- and Gender-Specific Proteomic Profiling

(2009) Sasisekhar Bennuru et al.   PLoS Neglected Tropical Diseases

Mosquito Infection Responses to Developing Filarial Worms

(2009) Sara M. Erickson et al.   PLoS Neglected Tropical Diseases

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

Defining diversity, specialization, and gene specificity in transcriptomes through information theory

(2008) O. Martinez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stage- and Gender-Specific Proteomic Analysis of Brugia malayi Excretory-Secretory Products

(2008) Yovany Moreno et al.   PLoS Neglected Tropical Diseases

Behind the scene, something else is pulling the strings: Emphasizing parasitic manipulation in vector-borne diseases

(2007) Thierry Lefèvre et al.   INFECTION GENETICS AND EVOLUTION

Cystatins from filarial parasites: Evolution, adaptation and function in the host–parasite relationship☆

(2007) W GREGORY et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY