Distance, elevation and environment as drivers of diversity and divergence in bumble bees across latitude and altitude

Genomic signals of selection predict climate-driven population declines in a migratory bird

(2018) Rachael A. Bay et al.   SCIENCE

Accelerated increase in plant species richness on mountain summits is linked to warming

(2018) Manuel J. Steinbauer et al.   NATURE

Queens and Workers Contribute Differently to Adaptive Evolution in Bumble Bees and Honey Bees

(2017) Brock A. Harpur et al.   Genome Biology and Evolution

Genetic diversity and gene flow decline with elevation in montane mayflies

(2017) N R Polato et al.   HEREDITY

lmerTest Package: Tests in Linear Mixed Effects Models

(2017) Alexandra Kuznetsova et al.   Journal of Statistical Software

Genetic effects of landscape, habitat preference and demography on three co-occurring turtle species

(2017) Brendan N. Reid et al.   MOLECULAR ECOLOGY

The K = 2 conundrum

(2017) Jasmine K. Janes et al.   MOLECULAR ECOLOGY

Population genomics reveals a candidate gene involved in bumble bee pigmentation

(2017) Meaghan L. Pimsler et al.   Ecology and Evolution

Bee conservation in the age of genomics

(2016) Jeffrey D. Lozier et al.   CONSERVATION GENETICS

Ecological niche modelling and coalescent simulations to explore the recent geographical range history of five widespread bumblebee species in Europe

(2016) Simon Dellicour et al.   JOURNAL OF BIOGEOGRAPHY

vcfr: a package to manipulate and visualize variant call format data in R

(2016) Brian J. Knaus et al.   Molecular Ecology Resources

Genomic distribution and estimation of nucleotide diversity in natural populations: perspectives from the collared flycatcher (Ficedula albicollis ) genome

(2016) Ludovic Dutoit et al.   Molecular Ecology Resources

Population genomics of divergence among extreme and intermediate color forms in a polymorphic insect

(2016) Jeffrey D. Lozier et al.   Ecology and Evolution

Landscape genetics of a tropical rescue pollinator

(2015) Rodolfo Jaffé et al.   CONSERVATION GENETICS

Local adaptation at range edges: comparing elevation and latitudinal gradients

(2015) A. H. Halbritter et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Habitat fragmentation and biodiversity conservation: key findings and future challenges

(2015) Maxwell C. Wilson et al.   LANDSCAPE ECOLOGY

Molecular tools and bumble bees: revealing hidden details of ecology and evolution in a model system

(2015) S. Hollis Woodard et al.   MOLECULAR ECOLOGY

Contemporary human-altered landscapes and oceanic barriers reduce bumble bee gene flow

(2015) S. Jha   MOLECULAR ECOLOGY

Climate change impacts on bumblebees converge across continents

(2015) J. T. Kerr et al.   SCIENCE

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

The genomes of two key bumblebee species with primitive eusocial organization

(2015) Ben M Sadd et al.   GENOME BIOLOGY

Degenerate adaptor sequences for detecting PCR duplicates in reduced representation sequencing data improve genotype calling accuracy

(2015) M. M. Y. Tin et al.   Molecular Ecology Resources

Ecological genomics meets community-level modelling of biodiversity: mapping the genomic landscape of current and future environmental adaptation

(2014) Matthew C. Fitzpatrick et al.   ECOLOGY LETTERS

Spatiotemporally consistent genomic signatures of reproductive isolation in a moving hybrid zone

(2014) Scott A. Taylor et al.   EVOLUTION

Fast and Efficient Estimation of Individual Ancestry Coefficients

(2014) Eric Frichot et al.   GENETICS

Trade-offs and utility of alternative RADseq methods: Reply to Puritzet al.

(2014) Kimberly R. Andrews et al.   MOLECULAR ECOLOGY

Dispersal ability and habitat requirements determine landscape-level genetic patterns in desert aquatic insects

(2014) Ivan C. Phillipsen et al.   MOLECULAR ECOLOGY

Is dispersal neutral?

(2014) Winsor H. Lowe et al.   TRENDS IN ECOLOGY & EVOLUTION

SDMtoolbox: a python-based GIS toolkit for landscape genetic, biogeographic and species distribution model analyses

(2014) Jason L. Brown   Methods in Ecology and Evolution

Landscape heterogeneity predicts gene flow in a widespread polymorphic bumble bee, Bombus bifarius (Hymenoptera: Apidae)

(2013) Jeffrey D. Lozier et al.   CONSERVATION GENETICS

How comparable are species distributions along elevational and latitudinal climate gradients?

(2013) Aud H. Halbritter et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Widespread phenotypic and genetic divergence along altitudinal gradients in animals

(2013) I. Keller et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Urban land use limits regional bumble bee gene flow

(2013) Shalene Jha et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Revisiting comparisons of genetic diversity in stable and declining species: assessing genome-wide polymorphism in North American bumble bees using RAD sequencing

(2013) J. D. Lozier   MOLECULAR ECOLOGY

Wild Pollinators Enhance Fruit Set of Crops Regardless of Honey Bee Abundance

(2013) L. A. Garibaldi et al.   SCIENCE

The Future of Species Under Climate Change: Resilience or Decline?

(2013) C. Moritz et al.   SCIENCE

Ten years of landscape genetics

(2013) Stéphanie Manel et al.   TRENDS IN ECOLOGY & EVOLUTION

Testing the ‘Pleistocene species pump’ in alpine habitats: lineage diversification of flightless ground beetles (Coleoptera: Carabidae: Nebria) in relation to altitudinal zonation

(2012) SEAN D. SCHOVILLE et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Geographical patterns of genetic divergence in the widespread Mesoamerican bumble bee Bombus ephippiatus (Hymenoptera: Apidae)

(2012) Michelle A. Duennes et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Climate-induced range contraction drives genetic erosion in an alpine mammal

(2012) Emily M. Rubidge et al.   Nature Climate Change

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Patterns of range-wide genetic variation in six North American bumble bee (Apidae: Bombus) species

(2011) JEFFREY D. LOZIER et al.   MOLECULAR ECOLOGY

Isolation-driven divergence: speciation in a widespread North American songbird (Aves: Certhiidae)

(2011) JOSEPH D. MANTHEY et al.   MOLECULAR ECOLOGY

Pleistocene origin and population history of a neoendemic alpine butterfly

(2011) SEAN. D. SCHOVILLE et al.   MOLECULAR ECOLOGY

Patterns of widespread decline in North American bumble bees

(2011) S. A. Cameron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Robust relationship inference in genome-wide association studies

(2010) Ani Manichaikul et al.   BIOINFORMATICS

A statistical explanation of MaxEnt for ecologists

(2010) Jane Elith et al.   DIVERSITY AND DISTRIBUTIONS

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Landscape genetics of high mountain frog metapopulations

(2010) M. A. MURPHY et al.   MOLECULAR ECOLOGY

Of glaciers and refugia: a decade of study sheds new light on the phylogeography of northwestern North America

(2010) AARON B. A. SHAFER et al.   MOLECULAR ECOLOGY

Quantifying population structure using the F-model

(2010) OSCAR E. GAGGIOTTI et al.   Molecular Ecology Resources

Global Biodiversity: Indicators of Recent Declines

(2010) S. H. M. Butchart et al.   SCIENCE

Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude

(2010) X. Yi et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Spatial patterns of variation due to natural selection in humans

(2009) John Novembre et al.   NATURE REVIEWS GENETICS

Birds track their Grinnellian niche through a century of climate change

(2009) M. W. Tingley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A simplified subgeneric classification of the bumblebees (genusBombus)

(2008) Paul H. Williams et al.   APIDOLOGIE

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Historical Biogeography, Divergence Times, and Diversification Patterns of Bumble Bees (Hymenoptera: Apidae: Bombus)

(2008) Heather M. Hines   SYSTEMATIC BIOLOGY

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources