Distribution Patterns of Microbial Community Structure Along a 7000-Mile Latitudinal Transect from the Mediterranean Sea Across the Atlantic Ocean to the Brazilian Coastal Sea

Unexpected links reflect the noise in networks

(2016) Anatoly Yambartsev et al.   Biology Direct

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

Hydrogen peroxide detoxification is a key mechanism for growth of ammonia-oxidizing archaea

(2016) Jong-Geol Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

North Atlantic ocean circulation and abrupt climate change during the last glaciation

(2016) L. G. Henry et al.   SCIENCE

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Abundance of Two Pelagibacter ubique Bacteriophage Genotypes along a Latitudinal Transect in the North and South Atlantic Oceans

(2016) Erin M. Eggleston et al.   Frontiers in Microbiology

Bacterioplankton Dynamics within a Large Anthropogenically Impacted Urban Estuary

(2016) Thomas C. Jeffries et al.   Frontiers in Microbiology

Hydrocarbon degraders establish at the costs of microbial richness, abundance and keystone taxa after crude oil contamination in permafrost environments

(2016) Sizhong Yang et al.   Scientific Reports

Bacterial and archaeal biogeography of the deep chlorophyll maximum in the South Pacific Gyre

(2015) EA Walsh et al.   AQUATIC MICROBIAL ECOLOGY

Local–global overlap in diversity informs mechanisms of bacterial biogeography

(2015) Joshua A Livermore et al.   ISME Journal

Marine microbial community dynamics and their ecological interpretation

(2015) Jed A. Fuhrman et al.   NATURE REVIEWS MICROBIOLOGY

The Unique Chemistry of Eastern Mediterranean Water Masses Selects for Distinct Microbial Communities by Depth

(2015) Stephen M. Techtmann et al.   PLoS One

Microbial community transcriptional networks are conserved in three domains at ocean basin scales

(2015) Frank O. Aylward et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes

(2015) A. Z. Worden et al.   SCIENCE

Uncovering hidden worlds of ocean biodiversity

(2015) E. V. Armbrust et al.   SCIENCE

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Determinants of community structure in the global plankton interactome

(2015) G. Lima-Mendez et al.   SCIENCE

Seawater-driven forward osmosis for enriching nitrogen and phosphorous in treated municipal wastewater: Effect of membrane properties and feed solution chemistry

(2015) Wenchao Xue et al.   WATER RESEARCH

Methanogenic archaea and sulfate reducing bacteria co-cultured on acetate: teamwork or coexistence?

(2015) Derya Ozuolmez et al.   Frontiers in Microbiology

Niche distribution and influence of environmental parameters in marine microbial communities: a systematic review

(2015) Felipe H. Coutinho et al.   PeerJ

Open science resources for the discovery and analysis of Tara Oceans data

(2015) Stéphane Pesant et al.   Scientific Data

Microbial Iron Mats at the Mid-Atlantic Ridge and Evidence that Zetaproteobacteria May Be Restricted to Iron-Oxidizing Marine Systems

(2015) Jarrod J. Scott et al.   PLoS One

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Bacterial community shift is induced by dynamic environmental parameters in a changing coastal ecosystem (northern Adriatic, northeastern Mediterranean Sea) - a 2-year time-series study

(2014) T. Tinta et al.   ENVIRONMENTAL MICROBIOLOGY

Seasonal dynamics of active SAR11 ecotypes in the oligotrophic Northwest Mediterranean Sea

(2014) Ian Salter et al.   ISME Journal

Implications of streamlining theory for microbial ecology

(2014) Stephen J Giovannoni et al.   ISME Journal

Hydrogenase-independent uptake and metabolism of electrons by the archaeon Methanococcus maripaludis

(2014) Svenja T Lohner et al.   ISME Journal

Distinct patterns of marine bacterial communities in the South and North Pacific Oceans

(2014) Sung-Suk Suh et al.   JOURNAL OF MICROBIOLOGY

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

(2014) Patrick J. Keeling et al.   PLOS BIOLOGY

Microbial diversity and community structure across environmental gradients in Bransfield Strait, Western Antarctic Peninsula

(2014) Camila N. Signori et al.   Frontiers in Microbiology

Fracture zones in the Mid Atlantic Ridge lead to alterations in prokaryotic and viral parameters in deep-water masses

(2014) Simone Muck et al.   Frontiers in Microbiology

Variations in pelagic bacterial communities in the North Atlantic Ocean coincide with water bodies

(2013) RL Hahnke et al.   AQUATIC MICROBIAL ECOLOGY

Complex patterns in phytoplankton and microeukaryote diversity along the estuarine continuum

(2013) Pauline Bazin et al.   HYDROBIOLOGIA

Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota

(2013) Zhigang Zhang et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Ecological Drivers of Biogeographic Patterns of Soil Archaeal Community

(2013) Yuan-Ming Zheng et al.   PLoS One

Pattern and synchrony of gene expression among sympatric marine microbial populations

(2013) E. A. Ottesen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

(2013) B. K. Swan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria

(2013) Rohit Ghai et al.   Scientific Reports

Metagenomics of microbial life in extreme temperature environments

(2012) Anna Lewin et al.   CURRENT OPINION IN BIOTECHNOLOGY

Patterns of marine bacterioplankton biodiversity in the surface waters of the Scotia Arc, Southern Ocean

(2012) Rachel E. Jamieson et al.   FEMS MICROBIOLOGY ECOLOGY

Phylogenetic Analysis Suggests That Habitat Filtering Is Structuring Marine Bacterial Communities Across the Globe

(2012) Mikael Pontarp et al.   MICROBIAL ECOLOGY

Global biogeography of SAR11 marine bacteria

(2012) Mark V Brown et al.   Molecular Systems Biology

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Habitat filtering and niche differentiation jointly explain species relative abundance within grassland communities along fertility and disturbance gradients

(2012) Vincent Maire et al.   NEW PHYTOLOGIST

Is There a Seamount Effect on Microbial Community Structure and Biomass? The Case Study of Seine and Sedlo Seamounts (Northeast Atlantic)

(2012) Ana Mendonça et al.   PLoS One

Seasonality in Ocean Microbial Communities

(2012) S. J. Giovannoni et al.   SCIENCE

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Ligand Migration in Methanosarcina acetivorans Protoglobin: Effects of Ligand Binding and Dimeric Assembly

(2011) Flavio Forti et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

(2011) Lucie Zinger et al.   PLoS One

Do Patterns of Bacterial Diversity along Salinity Gradients Differ from Those Observed for Macroorganisms?

(2011) Jianjun Wang et al.   PLoS One

How to Make a Living by Exhaling Methane

(2010) James G. Ferry   Annual Review of Microbiology

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current

(2010) Alyson E. Santoro et al.   ENVIRONMENTAL MICROBIOLOGY

A global network of coexisting microbes from environmental and whole-genome sequence data

(2010) S. Chaffron et al.   GENOME RESEARCH

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

How far details are important in ecosystem modelling: the case of multi-limiting nutrients in phytoplankton-zooplankton interactions

(2010) J.- C. Poggiale et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Species assortment or habitat filtering: a case study of spider communities on lake islands

(2009) Werner Ulrich et al.   ECOLOGICAL RESEARCH

The seasonal structure of microbial communities in the Western English Channel

(2009) Jack A. Gilbert et al.   ENVIRONMENTAL MICROBIOLOGY

Relative roles of niche and neutral processes in structuring a soil microbial community

(2009) Alex J Dumbrell et al.   ISME Journal

Global ecological patterns in uncultured Archaea

(2009) Jean-Christophe Auguet et al.   ISME Journal

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

Viruses manipulate the marine environment

(2009) Forest Rohwer et al.   NATURE

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

Metabolic, Phylogenetic, and Ecological Diversity of the Methanogenic Archaea

(2008) Yuchen Liu et al.   Annals of the New York Academy of Sciences

Environmental factors controlling the phytoplankton blooms at the Patagonia shelf-break in spring

(2008) Virginia M.T. Garcia et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Nitrification in terrestrial hot springs of Iceland and Kamchatka

(2008) Laila J. Reigstad et al.   FEMS MICROBIOLOGY ECOLOGY

Niche differentiation among sulfur-oxidizing bacterial populations in cave waters

(2008) Jennifer L Macalady et al.   ISME Journal

The influence of sex, handedness, and washing on the diversity of hand surface bacteria

(2008) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA