Microbial Iron Mats at the Mid-Atlantic Ridge and Evidence that Zetaproteobacteria May Be Restricted to Iron-Oxidizing Marine Systems

Diversity and abundance of Bacteria and nirS-encoding denitrifiers associated with the Juan de Fuca Ridge hydrothermal system

(2014) Annie Bourbonnais et al.   ANNALS OF MICROBIOLOGY

The gill chamber epibiosis of deep-sea shrimpRimicarisexoculata: an in-depth metagenomic investigation and discovery ofZetaproteobacteria

(2014) Cyrielle Jan et al.   ENVIRONMENTAL MICROBIOLOGY

First Evidence for the Presence of Iron Oxidizing Zetaproteobacteria at the Levantine Continental Margins

(2014) Maxim Rubin-Blum et al.   PLoS One

Nanoparticulate pyrite and other nanoparticles are a widespread component of hydrothermal vent black smoker emissions

(2013) Amy Gartman et al.   CHEMICAL GEOLOGY

Hidden in plain sight: discovery of sheath-forming, iron-oxidizingZetaproteobacteriaat Loihi Seamount, Hawaii, USA

(2013) Emily J. Fleming et al.   FEMS MICROBIOLOGY ECOLOGY

Linking geology, fluid chemistry, and microbial activity of basalt- and ultramafic-hosted deep-sea hydrothermal vent environments

(2013) M. Perner et al.   Geobiology

Ecological succession among iron-oxidizing bacteria

(2013) Emily J Fleming et al.   ISME Journal

Slow-spreading submarine ridges in the South Atlantic as a significant oceanic iron source

(2013) Mak A. Saito et al.   Nature Geoscience

Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics

(2013) David Emerson et al.   Frontiers in Microbiology

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

A precision multi-sampler for deep-sea hydrothermal microbial mat studies

(2012) J.A. Breier et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

In situchemistry and microbial community compositions in five deep-sea hydrothermal fluid samples from Irina II in the Logatchev field

(2012) Mirjam Perner et al.   ENVIRONMENTAL MICROBIOLOGY

Inter-field variability in the microbial communities of hydrothermal vent deposits from a back-arc basin

(2012) G. E. FLORES et al.   Geobiology

Contemporary environmental variation determines microbial diversity patterns in acid mine drainage

(2012) Jia-Liang Kuang et al.   ISME Journal

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Energy Transfer Through Food Webs at Hydrothermal Vents: Linking the Lithosphere to the Biosphere

(2012) Breea Govenar   OCEANOGRAPHY

Chemoautotrophy at Deep-Sea Vents: Past, Present, and Future

(2012) Stefan Sievert et al.   OCEANOGRAPHY

The Discovery of New Deep-Sea Hydrothermal Vent Communities in the Southern Ocean and Implications for Biogeography

(2012) Alex D. Rogers et al.   PLOS BIOLOGY

Mineralogy of Iron Microbial Mats from Loihi Seamount

(2012) Brandy M. Toner et al.   Frontiers in Microbiology

The Microbial Ferrous Wheel in a Neutral pH Groundwater Seep

(2012) Eric E. Roden et al.   Frontiers in Microbiology

Assessing and Improving Methods Used in Operational Taxonomic Unit-Based Approaches for 16S rRNA Gene Sequence Analysis

(2011) Patrick D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Microbial community structure of hydrothermal deposits from geochemically different vent fields along the Mid-Atlantic Ridge

(2011) Gilberto E. Flores et al.   ENVIRONMENTAL MICROBIOLOGY

Molecular characterization of putative biocorroding microbiota with a novel niche detection of Epsilon- and Zetaproteobacteria in Pacific Ocean coastal seawaters

(2011) Hongyue Dang et al.   ENVIRONMENTAL MICROBIOLOGY

Tracing iron-fueled microbial carbon production within the hydrothermal plume at the Loihi seamount

(2011) Sarah A. Bennett et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Ultra-diffuse hydrothermal venting supports Fe-oxidizing bacteria and massive umber deposition at 5000 m off Hawaii

(2011) Katrina J Edwards et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Microbial Ecology of the Dark Ocean above, at, and below the Seafloor

(2011) B. N. Orcutt et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The iron-oxidizing proteobacteria

(2011) S. Hedrich et al.   MICROBIOLOGY-SGM

Microbiology of Seamounts: Common Patterns Observed in Community Structure

(2011) David Emerson et al.   OCEANOGRAPHY

Mariprofundus ferrooxydans PV-1 the First Genome of a Marine Fe(II) Oxidizing Zetaproteobacterium

(2011) Esther Singer et al.   PLoS One

Decontamination of MDA Reagents for Single Cell Whole Genome Amplification

(2011) Tanja Woyke et al.   PLoS One

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Iron-Oxidizing Bacteria: An Environmental and Genomic Perspective

(2010) David Emerson et al.   Annual Review of Microbiology

Neutrophilic Iron-Oxidizing “Zetaproteobacteria” and Mild Steel Corrosion in Nearshore Marine Environments

(2010) Joyce M. McBeth et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Lithotrophic iron-oxidizing bacteria produce organic stalks to control mineral growth: implications for biosignature formation

(2010) Clara S Chan et al.   ISME Journal

Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing

(2010) HÉLÈNE AGOGUÉ et al.   MOLECULAR ECOLOGY

Archaea and bacteria with surprising microdiversity show shifts in dominance over 1,000-year time scales in hydrothermal chimneys

(2010) W. J. Brazelton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies

(2010) Patrick D. Schloss   PLoS Computational Biology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial diversity associated with the hydrothermal shrimpRimicaris exoculatagut and occurrence of a resident microbial community

(2009) Lucile Durand et al.   FEMS MICROBIOLOGY ECOLOGY

Diversity of iron oxidizers in wetland soils revealed by novel 16S rRNA primers targeting Gallionella-related bacteria

(2009) Juanjuan Wang et al.   ISME Journal

Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

(2009) Marcus J. Claesson et al.   PLoS One

A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies

(2009) Patrick D. Schloss   PLoS One

Subseafloor sedimentary life in the South Pacific Gyre

(2009) Steven D'Hondt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)

(2008) Scot E Dowd et al.   BMC MICROBIOLOGY

Symbiotic diversity in marine animals: the art of harnessing chemosynthesis

(2008) Nicole Dubilier et al.   NATURE REVIEWS MICROBIOLOGY