The Unique Chemistry of Eastern Mediterranean Water Masses Selects for Distinct Microbial Communities by Depth

River organic matter shapes microbial communities in the sediment of the Rhône prodelta

(2014) Sonja K Fagervold et al.   ISME Journal

Ammonia availability shapes the seasonal distribution and activity of archaeal and bacterial ammonia oxidizers in the Puget Sound Estuary

(2014) Hidetoshi Urakawa et al.   LIMNOLOGY AND OCEANOGRAPHY

SUP05 Dominates the Gammaproteobacterial Sulfur Oxidizer Assemblages in Pelagic Redoxclines of the Central Baltic and Black Seas

(2013) Sabine Glaubitz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of phosphorus starvation versus limitation on the marine cyanobacteriumProchlorococcus MED4 II: gene expression

(2013) Emily Nahas Reistetter et al.   ENVIRONMENTAL MICROBIOLOGY

Effects of phosphorus starvation versus limitation on the marine cyanobacteriumProchlorococcus MED4 I: uptake physiology

(2013) Kristen M. Krumhardt et al.   ENVIRONMENTAL MICROBIOLOGY

Metabolic flexibility of enigmatic SAR324 revealed through metagenomics and metatranscriptomics

(2013) Cody S. Sheik et al.   ENVIRONMENTAL MICROBIOLOGY

Ecology of marine Bacteroidetes: a comparative genomics approach

(2013) Beatriz Fernández-Gómez et al.   ISME Journal

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Processes and patterns of oceanic nutrient limitation

(2013) C. M. Moore et al.   Nature Geoscience

Advection shapes Southern Ocean microbial assemblages independent of distance and environment effects

(2013) David Wilkins et al.   Nature Communications

Dinitrogen fixation in aphotic oxygenated marine environments

(2013) Eyal Rahav et al.   Frontiers in Microbiology

Advances in monitoring environmental microbes

(2012) Terry C Hazen et al.   CURRENT OPINION IN BIOTECHNOLOGY

Ocean currents shape the microbiome of Arctic marine sediments

(2012) Leila J Hamdan et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Evidence for hydrogen oxidation and metabolic plasticity in widespread deep-sea sulfur-oxidizing bacteria

(2012) K. Anantharaman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Contrasting microbial assemblages in adjacent water masses associated with the East Australian Current

(2012) Justin R. Seymour et al.   Environmental Microbiology Reports

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Is dinitrogen fixation significant in the Levantine Basin, East Mediterranean Sea?

(2011) Tali Yogev et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity and distribution of cold-seep fauna associated with different geological and environmental settings at mud volcanoes and pockmarks of the Nile Deep-Sea Fan

(2011) Bénédicte Ritt et al.   MARINE BIOLOGY

Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function

(2011) John A. Fuerst et al.   NATURE REVIEWS MICROBIOLOGY

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Soil moisture is the major factor influencing microbial community structure and enzyme activities across seven biogeoclimatic zones in western Canada

(2011) Beth F.T. Brockett et al.   SOIL BIOLOGY & BIOCHEMISTRY

Water-column stratification governs the community structure of subtropical marine picophytoplankton

(2011) Heather A. Bouman et al.   Environmental Microbiology Reports

Environmental Factors Shape Sediment Anammox Bacterial Communities in Hypernutrified Jiaozhou Bay, China

(2010) H. Dang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Temperature controls on aquatic bacterial production and community dynamics in arctic lakes and streams

(2010) Heather E. Adams et al.   ENVIRONMENTAL MICROBIOLOGY

First basin-wide experimental results on N2fixation in the open Mediterranean Sea

(2010) Valeria Ibello et al.   GEOPHYSICAL RESEARCH LETTERS

Widespread active seepage activity on the Nile Deep Sea Fan (offshore Egypt) revealed by high-definition geophysical imagery

(2010) Stéphanie Dupré et al.   MARINE GEOLOGY

Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing

(2010) HÉLÈNE AGOGUÉ et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Enigmatic, ultrasmall, uncultivated Archaea

(2010) B. J. Baker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

(2010) C. B. Walker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Why is the Eastern Mediterranean phosphorus limited?

(2010) M.D. Krom et al.   PROGRESS IN OCEANOGRAPHY

Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria

(2010) Terry C. Hazen et al.   SCIENCE

Spatial patterns of bacterial abundance, activity and community composition in relation to water masses in the eastern Mediterranean Sea

(2009) T Yokokawa et al.   AQUATIC MICROBIAL ECOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Differential aerobic and anaerobic oxidation of hydrocarbon gases discharged at mud volcanoes in the Nile deep-sea fan

(2009) Vincent Mastalerz et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Microbial community genomics in eastern Mediterranean Sea surface waters

(2009) Roi Feingersch et al.   ISME Journal

Microbial methane oxidation and sulfate reduction at cold seeps of the deep Eastern Mediterranean Sea

(2009) Enoma O. Omoregie et al.   MARINE GEOLOGY

Abundance and activity of Chloroflexi-type SAR202 bacterioplankton in the meso- and bathypelagic waters of the (sub)tropical Atlantic

(2008) Marta M. Varela et al.   ENVIRONMENTAL MICROBIOLOGY

Comparison of deep-sea sediment microbial communities in the Eastern Mediterranean

(2008) Sander K. Heijs et al.   FEMS MICROBIOLOGY ECOLOGY

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea

(2008) Sarah M Sowell et al.   ISME Journal