Genetic structuring and secondary contact in the white-chested Amazilia hummingbird species complex

Multispecies coalescent delimits structure, not species

(2017) Jeet Sukumaran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential introgression and the maintenance of species boundaries in an advanced generation avian hybrid zone

(2016) Jennifer Walsh et al.   BMC EVOLUTIONARY BIOLOGY

Genetic diversity of Didelphis virginiana related to different levels of disturbance in the Highlands and the Central Depression regions of Chiapas, Mexico

(2016) Bárbara Cruz-Salazar et al.   JOURNAL OF TROPICAL ECOLOGY

Hidden histories of gene flow in highland birds revealed with genomic markers

(2016) Eugenia Zarza et al.   MOLECULAR ECOLOGY

A genomic perspective on hybridization and speciation

(2016) Bret A. Payseur et al.   MOLECULAR ECOLOGY

Comparative phylogeography clarifies the complexity and problems of continental distribution that drove A. R. Wallace to favor islands

(2016) Brett R. Riddle   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular and iridescent feather reflectance data reveal recent genetic diversification and phenotypic differentiation in a cloud forest hummingbird

(2016) Juan Francisco Ornelas et al.   Ecology and Evolution

North African hybrid sparrows (Passer domesticus,P. hispaniolensis) back from oblivion - ecological segregation and asymmetric mitochondrial introgression between parental species

(2016) Abdelkrim Ait Belkacem et al.   Ecology and Evolution

The tempo of trait divergence in geographic isolation: Avian speciation across the Marañon Valley of Peru

(2015) Benjamin M. Winger et al.   EVOLUTION

Comparative palaeodistribution of eight hummingbird species reveal a link between genetic diversity and Quaternary habitat and climate stability in Mexico

(2015) Juan Francisco Ornelas et al.   FOLIA ZOOLOGICA

Speciation in mountain refugia: phylogeography and demographic history of the pine siskin and black-capped siskin complex

(2015) Sofía Alvarez et al.   JOURNAL OF AVIAN BIOLOGY

At the passing gate: past introgression in the process of species formation betweenAmazilia violicepsandA. viridifronshummingbirds along the Mexican Transition Zone

(2015) Flor Rodríguez-Gómez et al.   JOURNAL OF BIOGEOGRAPHY

Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes)

(2015) Peter A. Hosner et al.   MOLECULAR BIOLOGY AND EVOLUTION

Estimating the temporal and spatial extent of gene flow among sympatric lizard populations (genusSceloporus) in the southern Mexican highlands

(2015) Jared A. Grummer et al.   MOLECULAR ECOLOGY

Hybrid zones: windows on climate change

(2015) Scott A. Taylor et al.   TRENDS IN ECOLOGY & EVOLUTION

Historical and current introgression in a Mesoamerican hummingbird species complex: a biogeographic perspective

(2015) Rosa Alicia Jiménez et al.   PeerJ

DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data

(2014) Jean-Marie Cornuet et al.   BIOINFORMATICS

Secondary contact followed by gene flow between divergent mitochondrial lineages of a widespread Neotropical songbird (Zonotrichia capensis)

(2014) Leonardo Campagna et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

GENOMIC AND MORPHOLOGICAL ANALYSIS OF A SEMIPERMEABLE AVIAN HYBRID ZONE SUGGESTS ASYMMETRICAL INTROGRESSION OF A SEXUAL SIGNAL

(2014) Daniel T. Baldassarre et al.   EVOLUTION

Differential high-altitude adaptation and restricted gene flow across a mid-elevation hybrid zone in Andean tit-tyrant flycatchers

(2014) Shane G. DuBay et al.   MOLECULAR ECOLOGY

The role of mitochondrial introgression in illuminating the evolutionary history of Nearctic treefrogs

(2014) Robert W. Bryson et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

A distinctive genetic footprint of ancient hybridization

(2013) John E. McCormack et al.   AUK

Phylogeography of the Trans-Volcanic bunchgrass lizard (Sceloporus bicanthalis) across the highlands of south-eastern Mexico

(2013) Adam D. Leaché et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Genetic differentiation and habitat connectivity across towhee hybrid zones in Mexico

(2013) Sarah E. Kingston et al.   EVOLUTIONARY ECOLOGY

Influence of the geological history of the Trans-Mexican Volcanic Belt on the diversification ofNolina parviflora(Asparagaceae: Nolinoideae)

(2013) Eduardo Ruiz-Sanchez et al.   JOURNAL OF BIOGEOGRAPHY

In and out of Mesoamerica: temporal divergence ofAmaziliahummingbirds pre-dates the orthodox account of the completion of the Isthmus of Panama

(2013) Juan Francisco Ornelas et al.   JOURNAL OF BIOGEOGRAPHY

Genetic, phenotypic and ecological divergence with gene flow at the Isthmus of Tehuantepec: the case of the azure-crowned hummingbird (Amazilia cyanocephala)

(2013) Flor Rodríguez-Gómez et al.   JOURNAL OF BIOGEOGRAPHY

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genetic divergence of the Mesoamerican azure-crowned hummingbird (Amazilia cyanocephala, Trochilidae) across the Motagua-Polochic-Jocotán fault system

(2013) Flor Rodríguez-Gómez et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Genetic signature of a range expansion and leap-frog event after the recent invasion of Europe by the grapevine downy mildew pathogenPlasmopara viticola

(2013) Michael C. Fontaine et al.   MOLECULAR ECOLOGY

The genomic consequences of adaptive divergence and reproductive isolation between species of manakins

(2013) T. L. Parchman et al.   MOLECULAR ECOLOGY

Gene flow and the maintenance of species boundaries

(2013) Erica L. Larson et al.   MOLECULAR ECOLOGY

Postglacial northward expansion and genetic differentiation between migratory and sedentary populations of the broad-tailed hummingbird (Selasphorus platycercus)

(2013) Andreia Malpica et al.   MOLECULAR ECOLOGY

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 February 2013-31 March 2013

(2013) et al.   Molecular Ecology Resources

Comparative Phylogeographic Analyses Illustrate the Complex Evolutionary History of Threatened Cloud Forests of Northern Mesoamerica

(2013) Juan Francisco Ornelas et al.   PLoS One

Key ornamental innovations facilitate diversification in an avian radiation

(2013) R. Maia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GENOME DIVERGENCE AND THE GENETIC ARCHITECTURE OF BARRIERS TO GENE FLOW BETWEENLYCAEIDES IDASANDL. MELISSA

(2012) Zachariah Gompert et al.   EVOLUTION

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

Extensive introgressive hybridization within the northern oriole group (GenusIcterus) revealed by three-species isolation with migration analysis

(2012) Frode Jacobsen et al.   Ecology and Evolution

Genetic Introgression: An Integral but neglected component of speciation in birds

(2011) Frank E. Rheindt et al.   AUK

Selection and geographic isolation influence hummingbird speciation: genetic, acoustic and morphological divergence in the wedge-tailed sabrewing (Campylopterus curvipennis)

(2011) Clementina González et al.   BMC EVOLUTIONARY BIOLOGY

Phylogeography of Middle American gophersnakes: mixed responses to biogeographical barriers across the Mexican Transition Zone

(2011) Robert W. Bryson et al.   JOURNAL OF BIOGEOGRAPHY

Isolation in habitat refugia promotes rapid diversification in a montane tropical salamander

(2011) Gabriela Parra-Olea et al.   JOURNAL OF BIOGEOGRAPHY

Hybrid speciation in sparrows I: phenotypic intermediacy, genetic admixture and barriers to gene flow

(2011) JO S. HERMANSEN et al.   MOLECULAR ECOLOGY

Chloroplast DNA phylogeography of a distylous shrub (Palicourea padifolia, Rubiaceae) reveals past fragmentation and demographic expansion in Mexican cloud forests

(2011) Carla Gutiérrez-Rodríguez et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Speciation in an avian complex endemic to the mountains of Middle America (Ergaticus, Aves: Parulidae)

(2011) Alfredo O. Barrera-Guzmán et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Lack of confidence in approximate Bayesian computation model choice

(2011) C. P. Robert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The dynamic history of the Trans-Mexican Volcanic Belt and the Mexico subduction zone

(2011) Luca Ferrari et al.   TECTONOPHYSICS

Characterization of ten microsatellite loci in the Broad-tailed Hummingbird (Selasphorus platycercus)

(2011) Sara J. Oyler-McCance et al.   Conservation Genetics Resources

Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0)

(2010) Jean-Marie Cornuet et al.   BMC BIOINFORMATICS

CALIBRATING DIVERGENCE TIMES ON SPECIES TREES VERSUS GENE TREES: IMPLICATIONS FOR SPECIATION HISTORY OF APHELOCOMA JAYS

(2010) John E. McCormack et al.   EVOLUTION

The computer program STRUCTURE does not reliably identify the main genetic clusters within species: simulations and implications for human population structure

(2010) S T Kalinowski   HEREDITY

Patterns of differential introgression in a salamander hybrid zone: inferences from genetic data and ecological niche modelling

(2010) M. W. H. CHATFIELD et al.   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

The roles of time and ecology in the continental radiation of the Old World leaf warblers (Phylloscopus and Seicercus)

(2010) T. D. Price   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Two pulses of diversification across the Isthmus of Tehuantepec in a montane Mexican bird fauna

(2010) B. R. Barber et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Acoustic differentiation reflects mitochondrial lineages in Blyth's leaf warbler and white-tailed leaf warbler complexes (Aves: Phylloscopus reguloides, Phylloscopus davisoni)

(2009) MARTIN PÄCKERT et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

MIGRATION-SELECTION BALANCE AND LOCAL ADAPTATION OF MITOCHONDRIAL HAPLOTYPES IN RUFOUS-COLLARED SPARROWS (ZONOTRICHIA CAPENSIS) ALONG AN ELEVATIONAL GRADIENT

(2009) Zachary A. Cheviron et al.   EVOLUTION

The effect of marker choice on estimated levels of introgression across an avian (Pipridae:Manacus) hybrid zone

(2009) TAMAKI YURI et al.   MOLECULAR ECOLOGY

Inferring weak population structure with the assistance of sample group information

(2009) MELISSA J. HUBISZ et al.   Molecular Ecology Resources

The causes of mitochondrial DNA gene tree paraphyly in birds

(2009) Bailey D. McKay et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Gene flow and species delimitation

(2009) Rémy J. Petit et al.   TRENDS IN ECOLOGY & EVOLUTION

Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation

(2008) Jean-Marie Cornuet et al.   BIOINFORMATICS

HALDANE'S RULE IN AN AVIAN SYSTEM: USING CLINE THEORY AND DIVERGENCE POPULATION GENETICS TO TEST FOR DIFFERENTIAL INTROGRESSION OF MITOCHONDRIAL, AUTOSOMAL, AND SEX-LINKED LOCI ACROSS THEPASSERINABUNTING HYBRID ZONE

(2008) Matthew D. Carling et al.   EVOLUTION

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources