Historical and current introgression in a Mesoamerican hummingbird species complex: a biogeographic perspective

Geographic isolation drives divergence of uncorrelated genetic and song variation in the Ruddy-capped Nightingale-Thrush ( Catharus frantzii ; Aves: Turdidae)

(2016) Marco F. Ortiz-Ramírez et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Robust molecular phylogeny and palaeodistribution modelling resolve a complex evolutionary history: glacial cycling drove recurrent mtDNA introgression amongPelophylaxfrogs in East Asia

(2015) Shohei Komaki et al.   JOURNAL OF BIOGEOGRAPHY

At the passing gate: past introgression in the process of species formation betweenAmazilia violicepsandA. viridifronshummingbirds along the Mexican Transition Zone

(2015) Flor Rodríguez-Gómez et al.   JOURNAL OF BIOGEOGRAPHY

Range dynamics driven by Quaternary climate oscillations explain the distribution of introgressed mtDNA of Lepus timidusorigin in hares from the Iberian Peninsula

(2015) Pelayo Acevedo et al.   JOURNAL OF BIOGEOGRAPHY

Influence of Pleistocene Glacial/Interglacial Cycles on the Genetic Structure of the Mistletoe Cactus Rhipsalis baccifera (Cactaceae) in Mesoamerica

(2015) J. F. Ornelas et al.   JOURNAL OF HEREDITY

The impact of Quaternary climate oscillations on divergence times and historical population sizes inThylamysopossums from the Andes

(2015) Thomas C. Giarla et al.   MOLECULAR ECOLOGY

Untangling the evolutionary history of a highly polymorphic species: introgressive hybridization and high genetic structure in the desert cichlid fishHerichtys minckleyi

(2015) Isabel S. Magalhaes et al.   MOLECULAR ECOLOGY

A multilocus analysis provides evidence for more than one species within Eugenes fulgens (Aves: Trochilidae)

(2015) Luz E. Zamudio-Beltrán et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Biological evidence supports an early and complex emergence of the Isthmus of Panama

(2015) Christine D. Bacon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biogeography and evolution of Central American cloud forest salamanders (Caudata: Plethodontidae:Cryptotriton), with the description of a new species

(2015) Sean M. Rovito et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Secondary contact followed by gene flow between divergent mitochondrial lineages of a widespread Neotropical songbird (Zonotrichia capensis)

(2014) Leonardo Campagna et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Molecular Phylogenetics and the Diversification of Hummingbirds

(2014) Jimmy A. McGuire et al.   CURRENT BIOLOGY

Past hybridization between two East Asian long-tailed tits (Aegithalos bonvaloti and A. fuliginosus)

(2014) Wenjuan Wang et al.   Frontiers in Zoology

Interglacial genetic diversification ofMoussonia deppeana(Gesneriaceae), a hummingbird-pollinated, cloud forest shrub in northern Mesoamerica

(2014) Juan Francisco Ornelas et al.   MOLECULAR ECOLOGY

Genetic, Ecological and Morphological Divergence between Populations of the Endangered Mexican Sheartail Hummingbird (Doricha eliza)

(2014) Yuyini Licona-Vera et al.   PLoS One

Challenges in analysis and interpretation of microsatellite data for population genetic studies

(2014) Alexander I. Putman et al.   Ecology and Evolution

Water barriers and intra-island isolation contribute to diversification in the insularAethopygasunbirds (Aves: Nectariniidae)

(2013) Peter A. Hosner et al.   JOURNAL OF BIOGEOGRAPHY

In and out of Mesoamerica: temporal divergence ofAmaziliahummingbirds pre-dates the orthodox account of the completion of the Isthmus of Panama

(2013) Juan Francisco Ornelas et al.   JOURNAL OF BIOGEOGRAPHY

Genetic, phenotypic and ecological divergence with gene flow at the Isthmus of Tehuantepec: the case of the azure-crowned hummingbird (Amazilia cyanocephala)

(2013) Flor Rodríguez-Gómez et al.   JOURNAL OF BIOGEOGRAPHY

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genetic divergence of the Mesoamerican azure-crowned hummingbird (Amazilia cyanocephala, Trochilidae) across the Motagua-Polochic-Jocotán fault system

(2013) Flor Rodríguez-Gómez et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Gene trees, species trees and Earth history combine to shed light on the evolution of migration in a model avian system

(2013) Gary Voelker et al.   MOLECULAR ECOLOGY

Postglacial northward expansion and genetic differentiation between migratory and sedentary populations of the broad-tailed hummingbird (Selasphorus platycercus)

(2013) Andreia Malpica et al.   MOLECULAR ECOLOGY

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 February 2013-31 March 2013

(2013) et al.   Molecular Ecology Resources

Comparative Phylogeographic Analyses Illustrate the Complex Evolutionary History of Threatened Cloud Forests of Northern Mesoamerica

(2013) Juan Francisco Ornelas et al.   PLoS One

Molecular evidence of the taxonomic status of western Mexican populations of Phaethornis longirostris (Aves: Trochilidae)

(2013) ENRIQUE ARBELÁEZ-CORTÉS et al.   ZOOTAXA

The role of glacial cycles in promoting genetic diversity in the Neotropics: the case of cloud forests during the Last Glacial Maximum

(2013) Santiago Ramírez-Barahona et al.   Ecology and Evolution

Survival of resident Neotropical birds: Considerations for sampling and analysis based on 20 years of bird-banding efforts in Mexico

(2012) Paul F. Doherty   AUK

Biogeographically dynamic genetic structure bridging two continents in the monotypic Central American rodentOtotylomys phyllotis

(2012) Tania A. Gutiérrez-García et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Historical introgression and the persistence of ghost alleles in the intermediate horseshoe bat (Rhinolophus affinis)

(2012) Xiuguang Mao et al.   MOLECULAR ECOLOGY

Incomplete lineage sorting or secondary admixture: disentangling historical divergence from recent gene flow in the Vinous-throated parrotbill (Paradoxornis webbianus)

(2012) Yanhua Qu et al.   MOLECULAR ECOLOGY

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

Genetic Introgression: An Integral but neglected component of speciation in birds

(2011) Frank E. Rheindt et al.   AUK

A cryptic contact zone between divergent mitochondrial DNA lineages in southwestern North America supports past introgressive hybridization in the yellow-rumped warbler complex (Aves: Dendroica coronata)

(2011) BORJA MILÁ et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Selection and geographic isolation influence hummingbird speciation: genetic, acoustic and morphological divergence in the wedge-tailed sabrewing (Campylopterus curvipennis)

(2011) Clementina González et al.   BMC EVOLUTIONARY BIOLOGY

Multilocus Resolution of Phylogeny and Timescale in the Extant Adaptive Radiation of Hawaiian Honeycreepers

(2011) Heather R.L. Lerner et al.   CURRENT BIOLOGY

GENETIC ADMIXTURE IN MULTIDIMENSIONAL ENVIRONMENTAL SPACE: ASYMMETRICAL NICHE SIMILARITY PROMOTES GENE FLOW IN ARMADILLOS (DASYPUS NOVEMCINCTUS)

(2011) Maria Clara Arteaga et al.   EVOLUTION

Evolution of Modern Birds Revealed by Mitogenomics: Timing the Radiation and Origin of Major Orders

(2011) M. A. Pacheco et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hybrid origin of Audubon’s warbler

(2011) ALAN BRELSFORD et al.   MOLECULAR ECOLOGY

Time-dependent rates of molecular evolution

(2011) SIMON Y. W. HO et al.   MOLECULAR ECOLOGY

Chloroplast DNA phylogeography of a distylous shrub (Palicourea padifolia, Rubiaceae) reveals past fragmentation and demographic expansion in Mexican cloud forests

(2011) Carla Gutiérrez-Rodríguez et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Speciation in an avian complex endemic to the mountains of Middle America (Ergaticus, Aves: Parulidae)

(2011) Alfredo O. Barrera-Guzmán et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Recurrent Introgression of Mitochondrial DNA Among Hares (Lepus spp.) Revealed by Species-Tree Inference and Coalescent Simulations

(2011) J. Melo-Ferreira et al.   SYSTEMATIC BIOLOGY

Characterization of ten microsatellite loci in the Broad-tailed Hummingbird (Selasphorus platycercus)

(2011) Sara J. Oyler-McCance et al.   Conservation Genetics Resources

RDP3: a flexible and fast computer program for analyzing recombination

(2010) D. P. Martin et al.   BIOINFORMATICS

A statistical explanation of MaxEnt for ecologists

(2010) Jane Elith et al.   DIVERSITY AND DISTRIBUTIONS

The profound influence of the Late Pliocene Panamanian uplift on the exchange, diversification, and distribution of New World birds

(2010) Brian Tilston Smith et al.   ECOGRAPHY

Using regional comparative phylogeographic data from snake lineages to infer historical processes in Middle America

(2010) Juan M. Daza et al.   ECOGRAPHY

Niche conservatism as an emerging principle in ecology and conservation biology

(2010) John J. Wiens et al.   ECOLOGY LETTERS

Similarity of contemporary and historical gene flow among highly fragmented populations of an endangered rattlesnake

(2010) JAMES E. CHIUCCHI et al.   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Two pulses of diversification across the Isthmus of Tehuantepec in a montane Mexican bird fauna

(2010) B. R. Barber et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

DOES NICHE DIVERGENCE ACCOMPANY ALLOPATRIC DIVERGENCE INAPHELOCOMAJAYS AS PREDICTED UNDER ECOLOGICAL SPECIATION?: INSIGHTS FROM TESTS WITH NICHE MODELS

(2009) John E. McCormack et al.   EVOLUTION

MIGRATION-SELECTION BALANCE AND LOCAL ADAPTATION OF MITOCHONDRIAL HAPLOTYPES IN RUFOUS-COLLARED SPARROWS (ZONOTRICHIA CAPENSIS) ALONG AN ELEVATIONAL GRADIENT

(2009) Zachary A. Cheviron et al.   EVOLUTION

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 August 2009–30 September 2009

(2009) et al.   Molecular Ecology Resources

The causes of mitochondrial DNA gene tree paraphyly in birds

(2009) Bailey D. McKay et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Great American Biotic Interchange in birds

(2009) J. T. Weir et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Mitochondrial DNA under siege in avian phylogeography

(2008) ROBERT M. ZINK et al.   MOLECULAR ECOLOGY

Phylogeography and population genetics of the Amethyst-throated Hummingbird (Lampornis amethystinus)

(2008) Nandadevi Cortés-Rodríguez et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources