Spatial Dynamics of Evolving Dosage Compensation in a Young Sex Chromosome System

Complete Dosage Compensation and Sex-Biased Gene Expression in the Moth Manduca sexta

(2014) Gilbert Smith et al.   Genome Biology and Evolution

Origins and functional evolution of Y chromosomes across mammals

(2014) Diego Cortez et al.   NATURE

Transcriptome Sequencing Reveals the Character of Incomplete Dosage Compensation across Multiple Tissues in Flycatchers

(2013) Severin Uebbing et al.   Genome Biology and Evolution

Recombination in the threespine stickleback genome-patterns and consequences

(2013) Marius Roesti et al.   MOLECULAR ECOLOGY

Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration

(2013) Doris Bachtrog   NATURE REVIEWS GENETICS

The evolutionary causes and consequences of sex-biased gene expression

(2013) John Parsch et al.   NATURE REVIEWS GENETICS

Sex chromosome dosage compensation: definitely not for everyone

(2013) Judith E. Mank   TRENDS IN GENETICS

Trade-off Between Selection for Dosage Compensation and Masculinization on the Avian Z Chromosome

(2012) Alison E. Wright et al.   GENETICS

Ohno’s “Peril of Hemizygosity” Revisited: Gene Loss, Dosage Compensation, and Mutation

(2012) David W. Hall et al.   Genome Biology and Evolution

Incomplete Sex Chromosome Dosage Compensation in the Indian Meal Moth, Plodia interpunctella, Based on De Novo Transcriptome Assembly

(2012) Peter W. Harrison et al.   Genome Biology and Evolution

Gene Survival and Death on the Human Y Chromosome

(2012) Melissa A. Wilson Sayres et al.   MOLECULAR BIOLOGY AND EVOLUTION

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Mammalian X chromosome inactivation evolved as a dosage-compensation mechanism for dosage-sensitive genes on the X chromosome

(2012) E. Pessia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid De Novo Evolution of X Chromosome Dosage Compensation in Silene latifolia, a Plant with Young Sex Chromosomes

(2012) Aline Muyle et al.   PLOS BIOLOGY

Mechanisms and Evolutionary Patterns of Mammalian and Avian Dosage Compensation

(2012) Philippe Julien et al.   PLOS BIOLOGY

ggbio: an R package for extending the grammar of graphics for genomic data

(2012) Tengfei Yin et al.   GENOME BIOLOGY

Plant Y Chromosome Degeneration Is Retarded by Haploid Purifying Selection

(2011) Margarita V. Chibalina et al.   CURRENT BIOLOGY

Nonrandom Gene Loss from the Drosophila miranda Neo-Y Chromosome

(2011) Vera B. Kaiser et al.   Genome Biology and Evolution

Lack of Global Dosage Compensation in Schistosoma mansoni, a Female-Heterogametic Parasite

(2011) Beatriz Vicoso et al.   Genome Biology and Evolution

ConDeTri - A Content Dependent Read Trimmer for Illumina Data

(2011) Linnéa Smeds et al.   PLoS One

Are all sex chromosomes created equal?

(2011) Doris Bachtrog et al.   TRENDS IN GENETICS

Hyperexpression of the X Chromosome in Both Sexes Results in Extensive Female Bias of X-Linked Genes in the Flour Beetle

(2010) Eldon G. Prince et al.   Genome Biology and Evolution

Age-dependent chromosomal distribution of male-biased genes in Drosophila

(2010) Y. E. Zhang et al.   GENOME RESEARCH

Female-Biased Expression on the X Chromosome as a Key Step in Sex Chromosome Evolution in Threespine Sticklebacks

(2010) Erica H. Leder et al.   MOLECULAR BIOLOGY AND EVOLUTION

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The World's Oldest Fossil Threespine Stickleback Fish

(2009) Michael A. Bell et al.   COPEIA

Drosophila dosage compensation: a complex voyage to the X chromosome

(2009) M. E. Gelbart et al.   DEVELOPMENT

The Deficit of Male-Biased Genes on the D. melanogaster X Chromosome Is Expression-Dependent: A Consequence of Dosage Compensation?

(2009) Beatriz Vicoso et al.   JOURNAL OF MOLECULAR EVOLUTION

Turnover of Sex Chromosomes in the Stickleback Fishes (Gasterosteidae)

(2009) Joseph A. Ross et al.   PLoS Genetics

Sex Chromosomes and the Evolution of Sexual Dimorphism: Lessons from the Genome

(2008) Judith E. Mank   AMERICAN NATURALIST

Molecular Cytogenetic Evidence of Rearrangements on the Y Chromosome of the Threespine Stickleback Fish

(2008) J. A. Ross et al.   GENETICS

All dosage compensation is local: Gene-by-gene regulation of sex-biased expression on the chicken Z chromosome

(2008) J E Mank et al.   HEREDITY