Complete Dosage Compensation and Sex-Biased Gene Expression in the Moth Manduca sexta

Determination of dosage compensation of the mammalian X chromosome by RNA-seq is dependent on analytical approach

(2013) Nathaniel K Jue et al.   BMC GENOMICS

Lack of Dosage Compensation Accompanies the Arrested Stage of Sex Chromosome Evolution in Ostriches

(2013) Sofia Adolfsson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Random convergence of olfactory inputs in the Drosophila mushroom body

(2013) Sophie J. C. Caron et al.   NATURE

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

The evolutionary causes and consequences of sex-biased gene expression

(2013) John Parsch et al.   NATURE REVIEWS GENETICS

Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution

(2013) B. Vicoso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sex chromosome dosage compensation: definitely not for everyone

(2013) Judith E. Mank   TRENDS IN GENETICS

Comparative Sex Chromosome Genomics in Snakes: Differentiation, Evolutionary Strata, and Lack of Global Dosage Compensation

(2013) Beatriz Vicoso et al.   PLOS BIOLOGY

Independent Evolution of Transcriptional Inactivation on Sex Chromosomes in Birds and Mammals

(2013) Alexandra M. Livernois et al.   PLoS Genetics

RNA sequencing reveals sexually dimorphic gene expression before gonadal differentiation in chicken and allows comprehensive annotation of the W-chromosome

(2013) Katie L Ayers et al.   GENOME BIOLOGY

Incomplete Sex Chromosome Dosage Compensation in the Indian Meal Moth, Plodia interpunctella, Based on De Novo Transcriptome Assembly

(2012) Peter W. Harrison et al.   Genome Biology and Evolution

Sex-Biased Gene Expression on the Avian Z Chromosome: Highly Expressed Genes Show Higher Male-Biased Expression

(2012) Sara Naurin et al.   PLoS One

Expression reduction in mammalian X chromosome evolution refutes Ohno's hypothesis of dosage compensation

(2012) F. Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanisms and Evolutionary Patterns of Mammalian and Avian Dosage Compensation

(2012) Philippe Julien et al.   PLOS BIOLOGY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

General lack of global dosage compensation in ZZ/ZW systems? Broadening the perspective with RNA-seq

(2011) Jochen BW Wolf et al.   BMC GENOMICS

The Monarch Butterfly Genome Yields Insights into Long-Distance Migration

(2011) Shuai Zhan et al.   CELL

SOME INCONVENIENT TRUTHS ABOUT SEX CHROMOSOME DOSAGE COMPENSATION AND THE POTENTIAL ROLE OF SEXUAL CONFLICT

(2011) Judith E. Mank et al.   EVOLUTION

Getting a Full Dose? Reconsidering Sex Chromosome Dosage Compensation in the Silkworm, Bombyx mori

(2011) James R. Walters et al.   Genome Biology and Evolution

Lack of Global Dosage Compensation in Schistosoma mansoni, a Female-Heterogametic Parasite

(2011) Beatriz Vicoso et al.   Genome Biology and Evolution

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

The origin and evolution of vertebrate sex chromosomes and dosage compensation

(2011) A M Livernois et al.   HEREDITY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Evidence for dosage compensation between the X chromosome and autosomes in mammals

(2011) Peter V Kharchenko et al.   NATURE GENETICS

Antennal transcriptome of Manduca sexta

(2011) E. Grosse-Wilde et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systematic analysis, comparison, and integration of disease based human genetic association data and mouse genetic phenotypic information

(2010) Yonqing Zhang et al.   BMC Medical Genomics

Hyperexpression of the X Chromosome in Both Sexes Results in Extensive Female Bias of X-Linked Genes in the Flour Beetle

(2010) Eldon G. Prince et al.   Genome Biology and Evolution

Sex bias and dosage compensation in the zebra finch versus chicken genomes: General and specialized patterns among birds

(2010) Y. Itoh et al.   GENOME RESEARCH

Female-Biased Expression on the X Chromosome as a Key Step in Sex Chromosome Evolution in Threespine Sticklebacks

(2010) Erica H. Leder et al.   MOLECULAR BIOLOGY AND EVOLUTION

RNA sequencing shows no dosage compensation of the active X-chromosome

(2010) Yuanyan Xiong et al.   NATURE GENETICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Unravelling the evolutionary origins of X chromosome inactivation in mammals: insights from marsupials and monotremes

(2009) Janine E. Deakin et al.   CHROMOSOME RESEARCH

Progress and prospects toward our understanding of the evolution of dosage compensation

(2009) Beatriz Vicoso et al.   CHROMOSOME RESEARCH

EFFECTIVE POPULATION SIZE AND THE FASTER-X EFFECT: EMPIRICAL RESULTS AND THEIR INTERPRETATION

(2009) Judith E. Mank et al.   EVOLUTION

The Silkworm Z Chromosome Is Enriched in Testis-Specific Genes

(2009) K. P. Arunkumar et al.   GENETICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

The W, X, Y and Z of sex-chromosome dosage compensation

(2009) Judith E. Mank   TRENDS IN GENETICS

Why does dosage compensation differ between XY and ZW taxa?

(2009) Sara Naurin et al.   TRENDS IN GENETICS

All dosage compensation is local: Gene-by-gene regulation of sex-biased expression on the chicken Z chromosome

(2008) J E Mank et al.   HEREDITY

Dosage analysis of Z chromosome genes using microarray in silkworm, Bombyx mori

(2008) Xingfu Zha et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Large-Scale Population Study of Human Cell Lines Indicates that Dosage Compensation Is Virtually Complete

(2008) Colette M. Johnston et al.   PLoS Genetics