What Does It Take to Evolve an Enhancer? A Simulation-Based Study of Factors Influencing the Emergence of Combinatorial Regulation
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Title
What Does It Take to Evolve an Enhancer? A Simulation-Based Study of Factors Influencing the Emergence of Combinatorial Regulation
Authors
Keywords
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Journal
Genome Biology and Evolution
Volume 7, Issue 6, Pages 1415-1431
Publisher
Oxford University Press (OUP)
Online
2015-05-09
DOI
10.1093/gbe/evv080
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- Deep conservation of cis-regulatory elements in metazoans
- (2013) I. Maeso et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq
- (2013) C. D. Arnold et al. SCIENCE
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- (2013) Mario Pujato et al. PLoS Computational Biology
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- (2011) Christos Josephides et al. BMC Systems Biology
- Rapid Evolutionary Rewiring of a Structurally Constrained Eye Enhancer
- (2011) Christina I. Swanson et al. CURRENT BIOLOGY
- Evolutionary Origins of Transcription Factor Binding Site Clusters
- (2011) Xin He et al. MOLECULAR BIOLOGY AND EVOLUTION
- Convergent Evolution of Endometrial Prolactin Expression in Primates, Mice, and Elephants Through the Independent Recruitment of Transposable Elements
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- (2008) D. Papatsenko et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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