What Does It Take to Evolve an Enhancer? A Simulation-Based Study of Factors Influencing the Emergence of Combinatorial Regulation
出版年份 2015 全文链接
标题
What Does It Take to Evolve an Enhancer? A Simulation-Based Study of Factors Influencing the Emergence of Combinatorial Regulation
作者
关键词
-
出版物
Genome Biology and Evolution
Volume 7, Issue 6, Pages 1415-1431
出版商
Oxford University Press (OUP)
发表日期
2015-05-09
DOI
10.1093/gbe/evv080
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Quantitative genome-wide enhancer activity maps for five Drosophila species show functional enhancer conservation and turnover during cis-regulatory evolution
- (2014) Cosmas D Arnold et al. NATURE GENETICS
- Quantitative Modeling of a Gene's Expression from Its Intergenic Sequence
- (2014) Md. Abul Hassan Samee et al. PLoS Computational Biology
- Evaluating thermodynamic models of enhancer activity on cellular resolution gene expression data
- (2013) Md. Abul Hassan Samee et al. METHODS
- Simulations of Enhancer Evolution Provide Mechanistic Insights into Gene Regulation
- (2013) Thyago Duque et al. MOLECULAR BIOLOGY AND EVOLUTION
- Exaptation of Transposable Elements into Novel Cis-Regulatory Elements: Is the Evidence Always Strong?
- (2013) F. S. J. de Souza et al. MOLECULAR BIOLOGY AND EVOLUTION
- Deep conservation of cis-regulatory elements in metazoans
- (2013) I. Maeso et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq
- (2013) C. D. Arnold et al. SCIENCE
- The Underlying Molecular and Network Level Mechanisms in the Evolution of Robustness in Gene Regulatory Networks
- (2013) Mario Pujato et al. PLoS Computational Biology
- Rearrangements of 2.5 Kilobases of Noncoding DNA from the Drosophila even-skipped Locus Define Predictive Rules of Genomic cis-Regulatory Logic
- (2013) Ah-Ram Kim et al. PLoS Genetics
- Pattern Formation by Graded and Uniform Signals in the Early Drosophila Embryo
- (2012) Jitendra S. Kanodia et al. BIOPHYSICAL JOURNAL
- Shadow enhancers: Frequently asked questions about distributed cis-regulatory information and enhancer redundancy
- (2011) Scott Barolo BIOESSAYS
- Whole-Embryo Modeling of Early Segmentation in Drosophila Identifies Robust and Fragile Expression Domains
- (2011) Jonathan Bieler et al. BIOPHYSICAL JOURNAL
- Modeling the evolution of a classic genetic switch
- (2011) Christos Josephides et al. BMC Systems Biology
- Rapid Evolutionary Rewiring of a Structurally Constrained Eye Enhancer
- (2011) Christina I. Swanson et al. CURRENT BIOLOGY
- Evolutionary Origins of Transcription Factor Binding Site Clusters
- (2011) Xin He et al. MOLECULAR BIOLOGY AND EVOLUTION
- Convergent Evolution of Endometrial Prolactin Expression in Primates, Mice, and Elephants Through the Independent Recruitment of Transposable Elements
- (2011) Deena Emera et al. MOLECULAR BIOLOGY AND EVOLUTION
- Formation of Regulatory Modules by Local Sequence Duplication
- (2011) Armita Nourmohammad et al. PLoS Computational Biology
- STAT Is an Essential Activator of the Zygotic Genome in the Early Drosophila Embryo
- (2011) Amy Tsurumi et al. PLoS Genetics
- Does Positive Selection Drive Transcription Factor Binding Site Turnover? A Test with Drosophila Cis-Regulatory Modules
- (2011) Bin Z. He et al. PLoS Genetics
- Temporal Coordination of Gene Networks by Zelda in the Early Drosophila Embryo
- (2011) Chung-Yi Nien et al. PLoS Genetics
- Zelda Binding in the Early Drosophila melanogaster Embryo Marks Regions Subsequently Activated at the Maternal-to-Zygotic Transition
- (2011) Melissa M. Harrison et al. PLoS Genetics
- Shadow Enhancers Foster Robustness of Drosophila Gastrulation
- (2010) Michael W. Perry et al. CURRENT BIOLOGY
- Evolutionary Mirages: Selection on Binding Site Composition Creates the Illusion of Conserved Grammars in Drosophila Enhancers
- (2010) Richard W. Lusk et al. PLoS Genetics
- Statistical tests for natural selection on regulatory regions based on the strength of transcription factor binding sites
- (2009) Alan M Moses BMC EVOLUTIONARY BIOLOGY
- Evolution of Regulatory Sequences in 12 Drosophila Species
- (2009) Jaebum Kim et al. PLoS Genetics
- Waiting for Two Mutations: With Applications to Regulatory Sequence Evolution and the Limits of Darwinian Evolution
- (2008) Rick Durrett et al. GENETICS
- Overdispersion of the Molecular Clock: Temporal Variation of Gene-Specific Substitution Rates in Drosophila
- (2008) T. Bedford et al. MOLECULAR BIOLOGY AND EVOLUTION
- The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila
- (2008) Hsiao-Lan Liang et al. NATURE
- Dual regulation by the Hunchback gradient in the Drosophila embryo
- (2008) D. Papatsenko et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More