The Underlying Molecular and Network Level Mechanisms in the Evolution of Robustness in Gene Regulatory Networks

Multiple Conformations of the Cytidine Repressor DNA-Binding Domain Coalesce to One upon Recognition of a Specific DNA Surface

(2011) Colleen L. Moody et al.   BIOCHEMISTRY

Neutral Evolution of Robustness in Drosophila microRNA Precursors

(2011) N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Jury remains out on simple models of transcription factor specificity

(2011) Quaid Morris et al.   NATURE BIOTECHNOLOGY

Quantitative analysis demonstrates most transcription factors require only simple models of specificity

(2011) Yue Zhao et al.   NATURE BIOTECHNOLOGY

Side-Chain Conformational Changes of Transcription Factor PhoB upon DNA Binding: A Population-Shift Mechanism

(2010) Tsutomu Yamane et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Mutational robustness can facilitate adaptation

(2010) Jeremy A. Draghi et al.   NATURE

Phenotypic robustness conferred by apparently redundant transcriptional enhancers

(2010) Nicolás Frankel et al.   NATURE

Robustness and Evolvability

(2010) Joanna Masel et al.   TRENDS IN GENETICS

Binding Site Turnover Produces Pervasive Quantitative Changes in Transcription Factor Binding between Closely Related Drosophila Species

(2010) Robert K. Bradley et al.   PLOS BIOLOGY

Redundancy and the Evolution of Cis-Regulatory Element Multiplicity

(2010) Tiago Paixão et al.   PLoS Computational Biology

Thermodynamics-Based Models of Transcriptional Regulation by Enhancers: The Roles of Synergistic Activation, Cooperative Binding and Short-Range Repression

(2010) Xin He et al.   PLoS Computational Biology

Specialization Can Drive the Evolution of Modularity

(2010) Carlos Espinosa-Soto et al.   PLoS Computational Biology

Evolution of transcriptional control in mammals

(2009) Michael D Wilson et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Comparative genomics of gene regulation—conservation and divergence of cis-regulatory information

(2009) Antonio CA Meireles-Filho et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Degeneracy: A design principle for achieving robustness and evolvability

(2009) James Whitacre et al.   JOURNAL OF THEORETICAL BIOLOGY

Experimental determination of the evolvability of a transcription factor

(2009) S. J. Maerkl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity and Complexity in DNA Recognition by Transcription Factors

(2009) G. Badis et al.   SCIENCE

Different gene regulation strategies revealed by analysis of binding motifs

(2009) Zeba Wunderlich et al.   TRENDS IN GENETICS

Robustness: mechanisms and consequences

(2009) Joanna Masel et al.   TRENDS IN GENETICS

Experimentally based sea urchin gene regulatory network and the causal explanation of developmental phenomenology

(2009) Smadar Ben-Tabou de-Leon et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Evolutionary Plasticity and Innovations in Complex Metabolic Reaction Networks

(2009) João F. Matias Rodrigues et al.   PLoS Computational Biology

Coupling of folding and DNA-binding in the bZIP domains of Jun–Fos heterodimeric transcription factor

(2008) Kenneth L. Seldeen et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

(2008) Sean B. Carroll   CELL

Survival of the sparsest: robust gene networks are parsimonious

(2008) Robert D Leclerc   Molecular Systems Biology

Evolvability and hierarchy in rewired bacterial gene networks

(2008) Mark Isalan et al.   NATURE

Neutralism and selectionism: a network-based reconciliation

(2008) Andreas Wagner   NATURE REVIEWS GENETICS

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

(2008) D. E. Newburger et al.   NUCLEIC ACIDS RESEARCH