Thermophilic endospores associated with migrated thermogenic hydrocarbons in deep Gulf of Mexico marine sediments

Succession in the petroleum reservoir microbiome through an oil field production lifecycle

(2017) Adrien Vigneron et al.   ISME Journal

Quantification of anaerobic thermophilic endospores in marine sediment by microcalorimetry, and its use in bioprospecting for gas and oil

(2017) Søren Dollerup Nielsen et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Anaerobic consortia of fungi and sulfate reducing bacteria in deep granite fractures

(2017) Henrik Drake et al.   Nature Communications

Fast and Simple Analysis of MiSeq Amplicon Sequencing Data with MetaAmp

(2017) Xiaoli Dong et al.   Frontiers in Microbiology

Atribacteria from the Subseafloor Sedimentary Biosphere Disperse to the Hydrosphere through Submarine Mud Volcanoes

(2017) Tatsuhiko Hoshino et al.   Frontiers in Microbiology

Identity, Abundance, and Reactivation Kinetics of Thermophilic Fermentative Endospores in Cold Marine Sediment and Seawater

(2017) Marta Volpi et al.   Frontiers in Microbiology

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Scaling laws predict global microbial diversity

(2016) Kenneth J. Locey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental Drivers of Differences in Microbial Community Structure in Crude Oil Reservoirs across a Methanogenic Gradient

(2016) Jenna L. Shelton et al.   Frontiers in Microbiology

Hydrogen Limitation and Syntrophic Growth among Natural Assemblages of Thermophilic Methanogens at Deep-sea Hydrothermal Vents

(2016) Begüm D. Topçuoğlu et al.   Frontiers in Microbiology

Endemic hydrothermal vent species identified in the open ocean seed bank

(2016) Giorgio Gonnella et al.   Nature Microbiology

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

Global dispersion and local diversification of the methane seep microbiome

(2015) S. Emil Ruff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Activity and phylogenetic diversity of sulfate-reducing microorganisms in low-temperature subsurface fluids within the upper oceanic crust

(2015) Alberto Robador et al.   Frontiers in Microbiology

Survival of Desulfotomaculum spores from estuarine sediments after serial autoclaving and high-temperature exposure

(2014) Louise A O'Sullivan et al.   ISME Journal

Evidence for extensive gene flow and Thermotoga subpopulations in subsurface and marine environments

(2014) Camilla L Nesbø et al.   ISME Journal

Spatial scales of bacterial community diversity at cold seeps (Eastern Mediterranean Sea)

(2014) Petra Pop Ristova et al.   ISME Journal

Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps

(2014) Sara Kleindienst et al.   ISME Journal

Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys

(2014) Michael C. Nelson et al.   PLoS One

Endospore-enriched sequencing approach reveals unprecedented diversity ofFirmicutesin sediments

(2014) Tina Wunderlin et al.   Environmental Microbiology Reports

Quantification of Endospore-Forming Firmicutes by Quantitative PCR with the Functional Genespo0A

(2013) Matthieu Bueche et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Does aspartic acid racemization constrain the depth limit of the subsurface biosphere?

(2013) T. C. Onstott et al.   Geobiology

Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents

(2013) Albert Leopold Müller et al.   ISME Journal

A Genomic Signature and the Identification of New Sporulation Genes

(2013) A. B. Abecasis et al.   JOURNAL OF BACTERIOLOGY

Gene expression in the deep biosphere

(2013) William D. Orsi et al.   NATURE

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Desulfotomaculum spp. and related gram-positive sulfate-reducing bacteria in deep subsurface environments

(2013) Thomas Aüllo et al.   Frontiers in Microbiology

The Deep, Dark Energy Biosphere: Intraterrestrial Life on Earth

(2012) Katrina J. Edwards et al.   Annual Review of Earth and Planetary Sciences

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Distribution andin situabundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments

(2012) Sara Kleindienst et al.   ENVIRONMENTAL MICROBIOLOGY

Dispersal of thermophilic Desulfotomaculum endospores into Baltic Sea sediments over thousands of years

(2012) Júlia Rosa de Rezende et al.   ISME Journal

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Global distribution of microbial abundance and biomass in subseafloor sediment

(2012) J. Kallmeyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

Massive dominance of Epsilonproteobacteria in formation waters from a Canadian oil sands reservoir containing severely biodegraded oil

(2011) Casey R. J. Hubert et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial methane cycling in a terrestrial mud volcano in eastern Taiwan

(2011) Yung-Hsin Chang et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenetic diversity of microbial communities associated with the crude-oil, large-insoluble-particle and formation-water components of the reservoir fluid from a non-flooded high-temperature petroleum reservoir

(2011) Hajime Kobayashi et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Microbial seed banks: the ecological and evolutionary implications of dormancy

(2011) Jay T. Lennon et al.   NATURE REVIEWS MICROBIOLOGY

Impact of natural oil and higher hydrocarbons on microbial diversity, distribution, and activity in Gulf of Mexico cold-seep sediments

(2010) Beth N. Orcutt et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Thermophilic anaerobes in Arctic marine sediments induced to mineralize complex organic matter at high temperature

(2010) Casey Hubert et al.   ENVIRONMENTAL MICROBIOLOGY

Evidence for syntrophic acetate oxidation coupled to hydrogenotrophic methanogenesis in the high-temperature petroleum reservoir of Yabase oil field (Japan)

(2010) Daisuke Mayumi et al.   ENVIRONMENTAL MICROBIOLOGY

Anaerobic Biodegradation of BTEX by Original Bacterial Communities from an Underground Gas Storage Aquifer

(2010) Sabrina Berlendis et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Microbial Provinces in the Subseafloor

(2009) Matthew O. Schrenk et al.   Annual Review of Marine Science

Characterisation of culture-independent and -dependent microbial communities in a high-temperature offshore chalk petroleum reservoir

(2009) Krista M. Kaster et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Prokaryotic Community Structure and Sulfate Reducer Activity in Water from High-Temperature Oil Reservoirs with and without Nitrate Treatment

(2009) A. Gittel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biocorrosive Thermophilic Microbial Communities in Alaskan North Slope Oil Facilities

(2009) Kathleen E. Duncan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Predominance ofMethanolobusspp. andMethanoculleusspp. in the Archaeal Communities of Saline Gas Field Formation Fluids

(2009) Susan Ehinger et al.   GEOMICROBIOLOGY JOURNAL

Microbial methane production in deep aquifer associated with the accretionary prism in Southwest Japan

(2009) Hiroyuki Kimura et al.   ISME Journal

A Constant Flux of Diverse Thermophilic Bacteria into the Cold Arctic Seabed

(2009) C. Hubert et al.   SCIENCE

Macro-Ecology of Gulf of Mexico Cold Seeps

(2008) Erik E. Cordes et al.   Annual Review of Marine Science

Diversity and Similarity of Microbial Communities in Petroleum Crude Oils Produced in Asia

(2008) Kunio YAMANE et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY