Succession in the petroleum reservoir microbiome through an oil field production lifecycle

Slow Microbial Life in the Seabed

(2016) Bo Barker Jørgensen et al.   Annual Review of Marine Science

Implications of Limited Thermophilicity of Nitrite Reduction for Control of Sulfide Production in Oil Reservoirs

(2016) Tekle Tafese Fida et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sulfur vesicles from Thermococcales: A possible role in sulfur detoxifying mechanisms

(2015) A. Gorlas et al.   BIOCHIMIE

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses

(2014) Pier Luigi Buttigieg et al.   FEMS MICROBIOLOGY ECOLOGY

Anaerobic oxidation of long-chain n-alkanes by the hyperthermophilic sulfate-reducing archaeon, Archaeoglobus fulgidus

(2014) Nadia Khelifi et al.   ISME Journal

Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases

(2014) Albert Leopold Müller et al.   ISME Journal

Gene expression in the deep biosphere

(2013) William D. Orsi et al.   NATURE

Predominant archaea in marine sediments degrade detrital proteins

(2013) Karen G. Lloyd et al.   NATURE

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Contribution of make-up water to the microbial community in an oilfield from which oil is produced by produced water re-injection

(2012) Yetunde Folarin et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Succession of Deferribacteres and Epsilonproteobacteria through a nitrate-treated high-temperature oil production facility

(2012) Antje Gittel et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Methanogenesis, sulfate reduction and crude oil biodegradation in hot Alaskan oilfields

(2010) Lisa M. Gieg et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity of Benzyl- and Alkylsuccinate Synthase Genes in Hydrocarbon-Impacted Environments and Enrichment Cultures

(2010) Amy V. Callaghan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Metabolic Versatility and Indigenous Origin of the Archaeon Thermococcus sibiricus, Isolated from a Siberian Oil Reservoir, as Revealed by Genome Analysis

(2009) A. V. Mardanov et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prokaryotic Community Structure and Sulfate Reducer Activity in Water from High-Temperature Oil Reservoirs with and without Nitrate Treatment

(2009) A. Gittel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial response to reinjection of produced water in an oil reservoir

(2009) Kristine Lysnes et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biocorrosive Thermophilic Microbial Communities in Alaskan North Slope Oil Facilities

(2009) Kathleen E. Duncan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Sulfide Remediation by Pulsed Injection of Nitrate into a Low Temperature Canadian Heavy Oil Reservoir

(2009) Gerrit Voordouw et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Deferribacter autotrophicus sp. nov., an iron(III)-reducing bacterium from a deep-sea hydrothermal vent

(2009) G. B. Slobodkina et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2009) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

Characterizing microbial diversity in production water from an Alaskan mesothermic petroleum reservoir with two independent molecular methods

(2008) Vinh D. Pham et al.   ENVIRONMENTAL MICROBIOLOGY