Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps

Hydrocarbon-related microbial processes in the deep sediments of the Eastern Mediterranean Levantine Basin

(2013) Maxim Rubin-Blum et al.   FEMS MICROBIOLOGY ECOLOGY

Ecology of marine Bacteroidetes: a comparative genomics approach

(2013) Beatriz Fernández-Gómez et al.   ISME Journal

Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP

(2013) Tony Gutierrez et al.   ISME Journal

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Microbial Communities of Deep-Sea Methane Seeps at Hikurangi Continental Margin (New Zealand)

(2013) S. Emil Ruff et al.   PLoS One

Geomicrobiological linkages between short-chain alkane consumption and sulfate reduction rates in seep sediments

(2013) Arpita Bose et al.   Frontiers in Microbiology

Anaerobic oxidation of short-chain alkanes in hydrothermal sediments: potential influences on sulfur cycling and microbial diversity

(2013) Melissa M. Adams et al.   Frontiers in Microbiology

Enhanced Gene Detection Assays for Fumarate-Adding Enzymes Allow Uncovering of Anaerobic Hydrocarbon Degraders in Terrestrial and Marine Systems

(2012) Frederick von Netzer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill

(2012) Jacob Baelum et al.   ENVIRONMENTAL MICROBIOLOGY

Characterization of the anaerobic microbial community in oil-polluted subtidal sediments: aromatic biodegradation potential after thePrestigeoil spill

(2012) Alejandro Acosta-González et al.   ENVIRONMENTAL MICROBIOLOGY

Distribution andin situabundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments

(2012) Sara Kleindienst et al.   ENVIRONMENTAL MICROBIOLOGY

Anaerobic degradation of propane and butane by sulfate-reducing bacteria enriched from marine hydrocarbon cold seeps

(2012) Ulrike Jaekel et al.   ISME Journal

Visualization of Candidate Division OP3 Cocci in Limonene-Degrading Methanogenic Cultures

(2012) Amelia-Elena Rotaru   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Microbial Diversity in Deep-sea Methane Seep Sediments Presented by SSU rRNA Gene Tag Sequencing

(2012) Takuro Nunoura et al.   MICROBES AND ENVIRONMENTS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Testing the Limits of 454 Pyrotag Sequencing: Reproducibility, Quantitative Assessment and Comparison to T-RFLP Fingerprinting of Aquifer Microbes

(2012) Giovanni Pilloni et al.   PLoS One

Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill

(2011) Joel E. Kostka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Enrichment of a microbial community performing anaerobic oxidation of methane in a continuous high-pressure bioreactor

(2011) Yu Zhang et al.   BMC MICROBIOLOGY

Electron acceptor-dependent identification of key anaerobic toluene degraders at a tar-oil-contaminated aquifer by Pyro-SIP

(2011) Giovanni Pilloni et al.   FEMS MICROBIOLOGY ECOLOGY

Anaerobic propane oxidation in marine hydrocarbon seep sediments

(2011) Steven D. Quistad et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Anaerobic oxidation of methane at different temperature regimes in Guaymas Basin hydrothermal sediments

(2011) Jennifer F Biddle et al.   ISME Journal

Thermophilic anaerobic oxidation of methane by marine microbial consortia

(2011) Thomas Holler et al.   ISME Journal

Marine integrons containing novel integrase genes, attachment sites, attI and associated gene cassettes in polluted sediments from Suez and Tokyo Bays

(2011) Hosam Elsaied et al.   ISME Journal

Diversity and Spatial Distribution of Prokaryotic Communities Along A Sediment Vertical Profile of A Deep-Sea Mud Volcano

(2011) Maria G. Pachiadaki et al.   MICROBIAL ECOLOGY

Deepwater Horizon Oil Spill: A Review of the Planktonic Response

(2011) Raffaela Abbriano et al.   OCEANOGRAPHY

Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill

(2011) M. C. Redmond et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of Novel Methane-, Ethane-, and Propane-Oxidizing Bacteria at Marine Hydrocarbon Seeps by Stable Isotope Probing

(2010) M. C. Redmond et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular biologic techniques applied to the microbial prospecting of oil and gas in the Ban 876 gas and oil field in China

(2010) Fan Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Impact of natural oil and higher hydrocarbons on microbial diversity, distribution, and activity in Gulf of Mexico cold-seep sediments

(2010) Beth N. Orcutt et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Phylogenetic diversity and metagenomics of candidate division OP3

(2010) Jana Glöckner et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity of Benzyl- and Alkylsuccinate Synthase Genes in Hydrocarbon-Impacted Environments and Enrichment Cultures

(2010) Amy V. Callaghan et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Biodegradation of low-molecular-weight alkanes under mesophilic, sulfate-reducing conditions: metabolic intermediates and community patterns

(2010) Kristen N. Savage et al.   FEMS MICROBIOLOGY ECOLOGY

Weak coupling between sulfate reduction and the anaerobic oxidation of methane in methane-rich seafloor sediments during ex situ incubation

(2010) Marshall W. Bowles et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

DNA-SIP identifies sulfate-reducing Clostridia as important toluene degraders in tar-oil-contaminated aquifer sediment

(2010) Christian Winderl et al.   ISME Journal

Structure of microbial communities and hydrocarbon-dependent sulfate reduction in the anoxic layer of a polluted microbial mat

(2010) Raeid M.M. Abed et al.   MARINE POLLUTION BULLETIN

Spatial Structure and Activity of Sedimentary Microbial Communities Underlying a Beggiatoa spp. Mat in a Gulf of Mexico Hydrocarbon Seep

(2010) Karen G. Lloyd et al.   PLoS One

Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria

(2010) Terry C. Hazen et al.   SCIENCE

Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses

(2010) Pablo Yarza et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Anaerobic Oxidation of Methane: Progress with an Unknown Process

(2009) Katrin Knittel et al.   Annual Review of Microbiology

Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments

(2009) Dirk Benndorf et al.   BIODEGRADATION

T-REX: software for the processing and analysis of T-RFLP data

(2009) Steven W Culman et al.   BMC BIOINFORMATICS

Co-occurrence of denitrification and nitrogen fixation in a meromictic lake, Lake Cadagno (Switzerland)

(2009) Hannah Halm et al.   ENVIRONMENTAL MICROBIOLOGY

Differential aerobic and anaerobic oxidation of hydrocarbon gases discharged at mud volcanoes in the Nile deep-sea fan

(2009) Vincent Mastalerz et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Microbial methane oxidation and sulfate reduction at cold seeps of the deep Eastern Mediterranean Sea

(2009) Enoma O. Omoregie et al.   MARINE GEOLOGY

Simple and Safe Method for Simultaneous Isolation of Microbial RNA and DNA from Problematic Populations

(2008) S. McIlroy et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

TRiFLe, a Program for In Silico Terminal Restriction Fragment Length Polymorphism Analysis with User-Defined Sequence Sets

(2008) P. Junier et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biogeochemistry and Community Composition of Iron- and Sulfur-Precipitating Microbial Mats at the Chefren Mud Volcano (Nile Deep Sea Fan, Eastern Mediterranean)

(2008) E. O. Omoregie et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

OpenMS – An open-source software framework for mass spectrometry

(2008) Marc Sturm et al.   BMC BIOINFORMATICS

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP)

(2008) Nico Jehmlich et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Anaerobic alkane-degrading strain AK-01 contains two alkylsuccinate synthase genes

(2007) Amy V. Callaghan et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Genes encoding the candidate enzyme for anaerobic activation of n-alkanes in the denitrifying bacterium, strain HxN1

(2007) Olav Grundmann et al.   ENVIRONMENTAL MICROBIOLOGY