Decomposer food web in a deciduous forest shows high share of generalist microorganisms and importance of microbial biomass recycling

Nutrient content affects the turnover of fungal biomass in forest topsoil and the composition of associated microbial communities

(2018) Vendula Brabcová et al.   SOIL BIOLOGY & BIOCHEMISTRY

Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens

(2017) J. Uehling et al.   ENVIRONMENTAL MICROBIOLOGY

Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change

(2017) Salvador Lladó et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Community-level physiological profiling analyses show potential to identify the copiotrophic bacteria present in soil environments

(2017) Salvador Lladó et al.   PLoS One

Cell wall glycopolymers of Streptomyces albus, Streptomyces albidoflavus and Streptomyces pathocidini

(2016) Alexander S. Shashkov et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Phylogenetic organization of bacterial activity

(2016) Ember M Morrissey et al.   ISME Journal

Dead fungal mycelium in forest soil represents a decomposition hotspot and a habitat for a specific microbial community

(2016) Vendula Brabcová et al.   NEW PHYTOLOGIST

Resource Partitioning between Bacteria, Fungi, and Protists in the Detritusphere of an Agricultural Soil

(2016) Susanne Kramer et al.   Frontiers in Microbiology

Unearthing the Ecology of Soil Microorganisms Using a High Resolution DNA-SIP Approach to Explore Cellulose and Xylose Metabolism in Soil

(2016) Charles Pepe-Ranney et al.   Frontiers in Microbiology

Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems

(2016) Rubén López-Mondéjar et al.   Scientific Reports

Stable-Isotope Probing Identifies Uncultured Planctomycetes as Primary Degraders of a Complex Heteropolysaccharide in Soil

(2015) Xiaoqing Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

From Rare to Dominant: a Fine-Tuned Soil Bacterial Bloom during Petroleum Hydrocarbon Bioremediation

(2015) Sebastián Fuentes et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional screening of abundant bacteria from acidic forest soil indicates the metabolic potential of Acidobacteria subdivision 1 for polysaccharide decomposition

(2015) Salvador Lladó et al.   BIOLOGY AND FERTILITY OF SOILS

Revisiting the hypothesis that fungal-to-bacterial dominance characterizes turnover of soil organic matter and nutrients

(2015) Johannes Rousk et al.   ECOLOGICAL MONOGRAPHS

Microbial ecosystems are dominated by specialist taxa

(2015) Mahendra Mariadassou et al.   ECOLOGY LETTERS

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

(2015) Lucia Žifčáková et al.   ENVIRONMENTAL MICROBIOLOGY

Enzymatic systems involved in decomposition reflects the ecology and taxonomy of saprotrophic fungi

(2015) Ivana Eichlerová et al.   Fungal Ecology

Changes in fungal communities along a boreal forest soil fertility gradient

(2015) Erica Sterkenburg et al.   NEW PHYTOLOGIST

Fine roots are the dominant source of recalcitrant plant litter in sugar maple-dominated northern hardwood forests

(2015) Mengxue Xia et al.   NEW PHYTOLOGIST

The bacterial community inhabiting temperate deciduous forests is vertically stratified and undergoes seasonal dynamics

(2015) Rubén López-Mondéjar et al.   SOIL BIOLOGY & BIOCHEMISTRY

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

(2015) Michaela Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

An Uncultivated Nitrate-Reducing Member of the Genus Herminiimonas Degrades Toluene

(2014) So-Jeong Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic Potential for Polysaccharide Deconstruction in Bacteria

(2014) Renaud Berlemont et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Potential of Cometabolic Transformation of Polysaccharides and Lignin in Lignocellulose by Soil Actinobacteria

(2014) Tomáš Větrovský et al.   PLoS One

Acinetobacter bohemicus sp. nov. widespread in natural soil and water ecosystems in the Czech Republic

(2014) Lenka Krizova et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Multisubstrate Isotope Labeling and Metagenomic Analysis of Active Soil Bacterial Communities

(2014) Y. Verastegui et al.   mBio

Analysis of soil fungal communities by amplicon pyrosequencing: current approaches to data analysis and the introduction of the pipeline SEED

(2013) Tomáš Větrovský et al.   BIOLOGY AND FERTILITY OF SOILS

Top-down control of soil fungal community composition by a globally distributed keystone consumer

(2013) Thomas W. Crowther et al.   ECOLOGY

Ectomycorrhizal fungi contribute to soil organic matter cycling in sub-boreal forests

(2013) Lori A Phillips et al.   ISME Journal

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Seasonal dynamics of fungal communities in a temperate oak forest soil

(2013) Jana Voříšková et al.   NEW PHYTOLOGIST

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

The production and turnover of extramatrical mycelium of ectomycorrhizal fungi in forest soils: role in carbon cycling

(2013) A. Ekblad et al.   PLANT AND SOIL

Soil food web properties explain ecosystem services across European land use systems

(2013) F. T. de Vries et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stable isotope probing of amino sugars - a promising tool to assess microbial interactions in soils

(2013) Samuel Bodé et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Roots and Associated Fungi Drive Long-Term Carbon Sequestration in Boreal Forest

(2013) K. E. Clemmensen et al.   SCIENCE

Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction

(2013) Pankaj Trivedi et al.   TRENDS IN MICROBIOLOGY

Lignocellulosic biomass as a carbohydrate source for lipid production by Mortierella isabellina

(2012) Jijiao Zeng et al.   BIORESOURCE TECHNOLOGY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers

(2012) Martina Štursová et al.   FEMS MICROBIOLOGY ECOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Responses of the extracellular enzyme activities in hardwood forest to soil temperature and seasonality and the potential effects of climate change

(2012) Petr Baldrian et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial control over carbon cycling in soil

(2012) Joshua P. Schimel et al.   Frontiers in Microbiology

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

A Large and Persistent Carbon Sink in the World's Forests

(2011) Y. Pan et al.   SCIENCE

Cultivating Uncultured Bacteria from Northern Wetlands: Knowledge Gained and Remaining Gaps

(2011) Svetlana N. Dedysh   Frontiers in Microbiology

Small-scale distribution of extracellular enzymes, fungal, and bacterial biomass in Quercus petraea forest topsoil

(2010) Petr Baldrian et al.   BIOLOGY AND FERTILITY OF SOILS

When metagenomics meets stable-isotope probing: progress and perspectives

(2010) Yin Chen et al.   TRENDS IN MICROBIOLOGY

Spatial variability of enzyme activities and microbial biomass in the upper layers of Quercus petraea forest soil

(2008) Jaroslav Šnajdr et al.   SOIL BIOLOGY & BIOCHEMISTRY