Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens

Isolation of Endohyphal Bacteria from Foliar Ascomycota andIn VitroEstablishment of Their Symbiotic Associations

(2016) Kayla R. Arendt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Isolating a functionally relevant guild of fungi from the root microbiome of Populus

(2016) Gregory Bonito et al.   Fungal Ecology

Mycoavidus cysteinexigens gen. nov., sp. nov., an endohyphal bacterium isolated from a soil isolate of the fungus Mortierella elongata

(2016) Shoko Ohshima et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data

(2016) Joseph W. Spatafora et al.   MYCOLOGIA

An interdomain network: the endobacterium of a mycorrhizal fungus promotes antioxidative responses in both fungal and plant hosts

(2016) Candida Vannini et al.   NEW PHYTOLOGIST

Phylogenomics and evolution of secondary metabolism in plant-associated fungi

(2015) Joseph W Spatafora et al.   CURRENT OPINION IN PLANT BIOLOGY

Fine-scale spatial genetic structure analysis of the black truffleTuber aestivumand its link to aroma variability

(2015) Virginie Molinier et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants

(2015) Ying Chang et al.   Genome Biology and Evolution

Symbiosis with an endobacterium increases the fitness of a mycorrhizal fungus, raising its bioenergetic potential

(2015) Alessandra Salvioli et al.   ISME Journal

Non-pathogenic Rhizobium radiobacter F4 deploys plant beneficial activity independent of its host Piriformospora indica

(2015) Stefanie P Glaeser et al.   ISME Journal

A novel intracellular nitrogen-fixing symbiosis made byUstilago maydisandBacillusspp.

(2015) José Ruiz-Herrera et al.   NEW PHYTOLOGIST

Mosaic genome of endobacteria in arbuscular mycorrhizal fungi: Transkingdom gene transfer in an ancient mycoplasma-fungus association

(2015) Gloria Torres-Cortés et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Minimal genomes of mycoplasma-related endobacteria are plastic and contain host-derived genes for sustained life within Glomeromycota

(2015) Mizue Naito et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

(2015) Marcel Huntemann et al.   Standards in Genomic Sciences

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

(2015) Thomas Brettin et al.   Scientific Reports

Horizontal Gene Transfer in Eukaryotic Plant Pathogens

(2014) Darren Soanes et al.   Annual Review of Phytopathology

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Diversity Patterns, Ecology and Biological Activities of Fungal Communities Associated with the Endemic Macroalgae Across the Antarctic Peninsula

(2014) Laura E. Furbino et al.   MICROBIAL ECOLOGY

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

(2014) Gregory Bonito et al.   MOLECULAR ECOLOGY

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Detection of a novel intracellular microbiome hosted in arbuscular mycorrhizal fungi

(2013) Alessandro Desirò et al.   ISME Journal

PATRIC, the bacterial bioinformatics database and analysis resource

(2013) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

(2013) E. Tisserant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phosphatidic acid synthesis in bacteria

(2012) Jiangwei Yao et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

Down-regulation of the caffeic acid O-methyltransferase gene in switchgrass reveals a novel monolignol analog

(2012) Timothy J Tschaplinski et al.   Biotechnology for Biofuels

Mollicutes-related endobacteria thrive inside liverwort-associated arbuscular mycorrhizal fungi

(2012) Alessandro Desirò et al.   ENVIRONMENTAL MICROBIOLOGY

EVOLUTIONARY STABILITY IN A 400-MILLION-YEAR-OLD HERITABLE FACULTATIVE MUTUALISM

(2012) Stephen J. Mondo et al.   EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Regulation of cell size in response to nutrient availability by fatty acid biosynthesis in Escherichia coli

(2012) Z. Yao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Evolution of an endofungal Lifestyle: Deductions from the Burkholderia rhizoxinica Genome

(2011) Gerald Lackner et al.   BMC GENOMICS

The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions

(2011) Stefano Ghignone et al.   ISME Journal

Where is the unseen fungal diversity hidden? A study of Mortierella reveals a large contribution of reference collections to the identification of fungal environmental sequences

(2011) László G. Nagy et al.   NEW PHYTOLOGIST

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

(2011) Marnix H. Medema et al.   NUCLEIC ACIDS RESEARCH

Genome Characterization of the Oleaginous Fungus Mortierella alpina

(2011) Lei Wang et al.   PLoS One

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

Diverse Bacteria Inhabit Living Hyphae of Phylogenetically Diverse Fungal Endophytes

(2010) M. T. Hoffman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads

(2010) Jeffrey Martin et al.   BMC GENOMICS

Endofungal bacterium controls its host by an hrp type III secretion system

(2010) Gerald Lackner et al.   ISME Journal

High resolution PTR-TOF: Quantification and formula confirmation of VOC in real time

(2010) Martin Graus et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Detection of Betaproteobacteria inside the Mycelium of the Fungus Mortierella elongata

(2010) Yoshinori Sato et al.   MICROBES AND ENVIRONMENTS

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Fungi

(2009) Jason E. Stajich et al.   CURRENT BIOLOGY

A high resolution and high sensitivity proton-transfer-reaction time-of-flight mass spectrometer (PTR-TOF-MS)

(2009) A. Jordan et al.   INTERNATIONAL JOURNAL OF MASS SPECTROMETRY

Endofungal bacteria as producers of mycotoxins

(2009) Gerald Lackner et al.   TRENDS IN MICROBIOLOGY

TagFinder for the quantitative analysis of gas chromatography—mass spectrometry (GC-MS)-based metabolite profiling experiments

(2008) Alexander Luedemann et al.   BIOINFORMATICS

The multienzyme architecture of eukaryotic fatty acid synthases

(2008) Marc Leibundgut et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Mitochondrial Fatty Acid Synthesis Type II: More than Just Fatty Acids

(2008) J. Kalervo Hiltunen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

Phylogenetic mixture models for proteins

(2008) S. Q. Le et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES